Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5120
         (416 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0239 + 22244565-22245144,22245249-22245594,22246847-222468...    29   2.0  
01_07_0146 + 41464554-41464943,41465607-41465945,41467582-414676...    28   3.5  
01_07_0142 + 41433580-41433969,41434633-41434971,41436609-414366...    28   3.5  
02_04_0649 - 24720367-24721071                                         27   4.6  
08_02_0052 + 11699468-11699700,11699799-11699916,11699991-117006...    27   6.0  

>03_05_0239 +
           22244565-22245144,22245249-22245594,22246847-22246868,
           22246982-22247054,22247131-22247233,22247312-22247366,
           22247448-22247542,22247913-22248204,22248292-22248495,
           22248583-22248615
          Length = 600

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 19/68 (27%), Positives = 31/68 (45%)
 Frame = -3

Query: 363 DLSLGNVRCRRLESTLVSDVGHSVSNSVRAHVRKFSPDLKSFVFSANVLQLTGFLSLDSV 184
           DL   N+      +  + D+GH   +      R+ SPD  + ++SA  L+  G L  D V
Sbjct: 465 DLKPWNIFLGPCGAVRIGDLGHGCWSKSYCDGRRGSPDCGTMLYSAPELR-NGLLVTDKV 523

Query: 183 AGFIAGVV 160
             +  GV+
Sbjct: 524 DVYSLGVI 531


>01_07_0146 +
           41464554-41464943,41465607-41465945,41467582-41467662,
           41468487-41468578,41468667-41468710,41468788-41468843,
           41469656-41469814,41469922-41469957,41470130-41470231
          Length = 432

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 13/48 (27%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
 Frame = -3

Query: 345 VRCRRLESTLVSDVGHSVSNSVRAH--VRKFSPDLKSFVFSANVLQLT 208
           ++C+ L  T++S  G  + N ++AH  V     DL  F+ +   + L+
Sbjct: 217 LKCKCLIVTIISQAGEVLDNYIQAHSEVHNNETDLMKFMLARTTIMLS 264


>01_07_0142 +
           41433580-41433969,41434633-41434971,41436609-41436689,
           41437514-41437605,41437694-41437737,41437815-41437870,
           41438683-41438841,41438949-41438984,41439157-41439258
          Length = 432

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 13/48 (27%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
 Frame = -3

Query: 345 VRCRRLESTLVSDVGHSVSNSVRAH--VRKFSPDLKSFVFSANVLQLT 208
           ++C+ L  T++S  G  + N ++AH  V     DL  F+ +   + L+
Sbjct: 217 LKCKCLIVTIISQAGEVLDNYIQAHSEVHNNETDLMKFMLARTTIMLS 264


>02_04_0649 - 24720367-24721071
          Length = 234

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 13/49 (26%), Positives = 20/49 (40%)
 Frame = +1

Query: 136 NDNIGVEGYNTGYETCNGIKAQETGQLKNIGTENEALEVRGEFAYMGPD 282
           N   G E +  G+  C G+     G +  +   N    + G F Y+G D
Sbjct: 14  NSEAGEENHVGGFYECTGLPRDADGFVAAVHEVNPVQFLAGVFRYLGED 62


>08_02_0052 +
           11699468-11699700,11699799-11699916,11699991-11700659,
           11700741-11700842,11700921-11701181,11701838-11702009,
           11702128-11702528,11703171-11703587
          Length = 790

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
 Frame = -3

Query: 363 DLSLGNVRCRRLESTLVSDVGHSV-SNSVRAHVRKFSPDLKSFVFSANVLQLTGFL 199
           DL L ++ CR  E+ +++   H V SN +   V    P    FV S + L     L
Sbjct: 155 DLPLFHIDCRHWENPMLNKGNHGVTSNLIPQAVSSLLPSSSGFVASGSNLSSNAVL 210


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,993,381
Number of Sequences: 37544
Number of extensions: 156348
Number of successful extensions: 431
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 429
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 431
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 754585524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)