Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5118
         (371 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC27F1.04c |nuf2||spindle pole body protein Nuf2|Schizosacchar...    26   2.2  
SPAC1805.01c |ppk6|SPAPJ736.02c|serine/threonine protein kinase ...    25   2.9  
SPBC887.16 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual         25   5.0  
SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|ch...    25   5.0  
SPAC3F10.08c |||rRNA processing protein Faf1|Schizosaccharomyces...    24   6.7  
SPCP1E11.03 |mug170||arrestin|Schizosaccharomyces pombe|chr 3|||...    24   8.8  

>SPAC27F1.04c |nuf2||spindle pole body protein
           Nuf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 441

 Score = 25.8 bits (54), Expect = 2.2
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = -1

Query: 263 EYQSPTMRRHLSNQANKL*N*PHTRKYERITKRVPYYNINDNYILITNPR 114
           E++   + + LSN   KL +  H+R  +    +    NI + Y +IT  R
Sbjct: 330 EFRKEQLLKQLSNAQEKLEHEQHSRNQKLEAAKQRMDNIREEYKVITQER 379


>SPAC1805.01c |ppk6|SPAPJ736.02c|serine/threonine protein kinase
           Ppk6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 25.4 bits (53), Expect = 2.9
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = -1

Query: 185 YERITKRVPYYNINDNYILITNPR 114
           +  I K + ++  N+NY L+T P+
Sbjct: 569 HPNIVKMITFFEDNENYYLLTEPQ 592


>SPBC887.16 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 109

 Score = 24.6 bits (51), Expect = 5.0
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +2

Query: 167 FL*FFRIFLYAVNFKACLL 223
           F+ FFRI LY+ NF+  ++
Sbjct: 86  FILFFRIHLYSCNFRMSII 104


>SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 628

 Score = 24.6 bits (51), Expect = 5.0
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = +3

Query: 3   NIDSIRPMQSTHTFQWSSFILNSRNISGRLLCPRLMTS 116
           NI S  P+  TH    +S  L + N+S  +  P   +S
Sbjct: 61  NISSAAPLDETHIATKASASLRNNNVSPHIPSPSSFSS 98


>SPAC3F10.08c |||rRNA processing protein Faf1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 259

 Score = 24.2 bits (50), Expect = 6.7
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +2

Query: 65  KFKKYFRPFTLSTPNDL 115
           +FKK FRP T S P  L
Sbjct: 229 QFKKGFRPVTFSAPGKL 245


>SPCP1E11.03 |mug170||arrestin|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 426

 Score = 23.8 bits (49), Expect = 8.8
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -3

Query: 333 LEFFYFLFSVFSYTIMKCNHQCTRIPI 253
           LE  Y++ S  + T +  N +CTR  I
Sbjct: 209 LELLYYISSTLTLTSLDQNIRCTRCTI 235


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,627,951
Number of Sequences: 5004
Number of extensions: 32596
Number of successful extensions: 90
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 118158644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)