Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5118
         (371 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_06_0177 + 21365314-21366100,21367451-21367578,21367715-213678...    27   6.2  
06_03_0486 - 21344680-21344805,21344922-21345115,21350027-213501...    26   8.2  
05_06_0014 + 24854462-24854570,24854958-24855065,24855240-248554...    26   8.2  
02_05_0260 - 27233734-27234324,27234422-27234573,27235006-272351...    26   8.2  

>09_06_0177 +
           21365314-21366100,21367451-21367578,21367715-21367870,
           21368006-21368196,21369392-21369434,21369537-21369627,
           21369859-21369935,21370278-21370366,21370474-21370657,
           21370885-21371138,21371465-21371567,21371646-21371977,
           21372060-21372504
          Length = 959

 Score = 26.6 bits (56), Expect = 6.2
 Identities = 15/48 (31%), Positives = 22/48 (45%)
 Frame = +2

Query: 2   KHRLNSSYAEHSYFSMELIHIKFKKYFRPFTLSTPNDLADLLLKYNYH 145
           K R   S+  H+ FS+ +  I+  KY    +     DL  L  + NYH
Sbjct: 588 KFRKILSHIAHTTFSLVIQVIRLTKYDYRLSNKLDKDLQKLRCRVNYH 635


>06_03_0486 -
           21344680-21344805,21344922-21345115,21350027-21350185,
           21350428-21350553,21350784-21350986,21351169-21351296,
           21351631-21351741
          Length = 348

 Score = 26.2 bits (55), Expect = 8.2
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -1

Query: 188 KYERITKRVPYYNINDNYILITNPRGH*AWT 96
           K E +TK +P Y+  +  I   NP  H  WT
Sbjct: 159 KVEELTKVMPNYHCFNQSINPANPDAHFKWT 189


>05_06_0014 +
           24854462-24854570,24854958-24855065,24855240-24855432,
           24855892-24856150,24856236-24856292,24856370-24856417,
           24856725-24856811,24856885-24856942,24857084-24857151,
           24857279-24857374,24857483-24857539,24857906-24857952,
           24858184-24858210,24858312-24858504
          Length = 468

 Score = 26.2 bits (55), Expect = 8.2
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -2

Query: 226 TKQTSFEINRIQENTKELQKESLTTTL 146
           T  TS+E++R+  + KELQ+ S+   L
Sbjct: 403 TTMTSYEVSRLSHSFKELQEVSVAHRL 429


>02_05_0260 -
           27233734-27234324,27234422-27234573,27235006-27235153,
           27235547-27235956,27236137-27236212
          Length = 458

 Score = 26.2 bits (55), Expect = 8.2
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +3

Query: 6   IDSIRPMQSTHTFQWSSFILNSRNISGRLLCPRL 107
           +D+ RP    H   W+   L+ R    RL+ PRL
Sbjct: 329 LDAGRPSGQHHLVDWAKPFLSDRRKLARLMDPRL 362


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,829,009
Number of Sequences: 37544
Number of extensions: 178662
Number of successful extensions: 299
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 296
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 299
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 588739508
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)