Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5118
         (371 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016420-7|AAB65303.1|  428|Caenorhabditis elegans Serpentine re...    30   0.46 
AC006610-5|AAK85453.1|  373|Caenorhabditis elegans Hypothetical ...    29   1.4  
U41534-5|AAB47597.1|  163|Caenorhabditis elegans Hypothetical pr...    28   1.9  
U41021-9|AAQ81276.1|  408|Caenorhabditis elegans Temporarily ass...    28   2.4  
U41021-8|AAQ81275.1|  406|Caenorhabditis elegans Temporarily ass...    28   2.4  
Z46242-1|CAA86325.2|  396|Caenorhabditis elegans Hypothetical pr...    27   3.2  
AL034488-6|CAA22450.2|  467|Caenorhabditis elegans Hypothetical ...    27   3.2  

>AF016420-7|AAB65303.1|  428|Caenorhabditis elegans Serpentine
           receptor, class r protein8 protein.
          Length = 428

 Score = 30.3 bits (65), Expect = 0.46
 Identities = 12/24 (50%), Positives = 18/24 (75%)
 Frame = +2

Query: 44  SMELIHIKFKKYFRPFTLSTPNDL 115
           +++ I IKF KY+ PF+  TP+DL
Sbjct: 37  TIQRIDIKFSKYYFPFSDDTPSDL 60


>AC006610-5|AAK85453.1|  373|Caenorhabditis elegans Hypothetical
           protein C30F12.7 protein.
          Length = 373

 Score = 28.7 bits (61), Expect = 1.4
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -2

Query: 271 MYPNTNHLLCVDTYPTKQTSFEINRIQENTK 179
           +Y N  H + + T PT+ +  +I  I+ENT+
Sbjct: 121 LYANILHCVTIPTVPTRHSGIDIVLIRENTE 151


>U41534-5|AAB47597.1|  163|Caenorhabditis elegans Hypothetical
           protein C16A3.5 protein.
          Length = 163

 Score = 28.3 bits (60), Expect = 1.9
 Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = +1

Query: 232 KCLRIVGDWYSG-TLMVAFHYCITKHR 309
           +CLR V +WY G  L V F  CI + R
Sbjct: 24  RCLREVDNWYGGNNLEVRFQKCIIRAR 50


>U41021-9|AAQ81276.1|  408|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 24, isoform b protein.
          Length = 408

 Score = 27.9 bits (59), Expect = 2.4
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = -2

Query: 361 IGRIGYRAPPRVFLFFIFCV*LYNNEMQPSMY 266
           IG  G+ APP VF FF F +   N+ + P +Y
Sbjct: 348 IGAFGHEAPPLVFKFF-FWLGYCNSGINPVIY 378


>U41021-8|AAQ81275.1|  406|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 24, isoform a protein.
          Length = 406

 Score = 27.9 bits (59), Expect = 2.4
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = -2

Query: 361 IGRIGYRAPPRVFLFFIFCV*LYNNEMQPSMY 266
           IG  G+ APP VF FF F +   N+ + P +Y
Sbjct: 346 IGAFGHEAPPLVFKFF-FWLGYCNSGINPVIY 376


>Z46242-1|CAA86325.2|  396|Caenorhabditis elegans Hypothetical
           protein F35G12.2 protein.
          Length = 396

 Score = 27.5 bits (58), Expect = 3.2
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = -2

Query: 280 QPSMYPNTNHLLCVDTYPTKQTSFEINRIQENTK 179
           Q ++Y N  H   + T P++ T  ++  I+ENT+
Sbjct: 135 QLNLYANVLHCSTIPTVPSRHTGIDMVIIRENTE 168


>AL034488-6|CAA22450.2|  467|Caenorhabditis elegans Hypothetical
           protein Y54G11A.7 protein.
          Length = 467

 Score = 27.5 bits (58), Expect = 3.2
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +1

Query: 223 WLDKCLRIVGDWYSGTLMVAFHYCITK 303
           WLD C+R +  W   T +  FH  I K
Sbjct: 32  WLDACIRQLVSWSDCTSLGGFHTSIEK 58


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,963,508
Number of Sequences: 27780
Number of extensions: 177532
Number of successful extensions: 427
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 425
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 427
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 535612900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)