Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5115
(412 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomy... 38 5e-04
SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein Pop2|Schizosacchar... 37 0.001
SPCC1672.07 |||U3 snoRNP-associated protein Utp21 |Schizosacchar... 33 0.013
SPBP22H7.07 |prp5|cwf1|WD repeat protein Prp5|Schizosaccharomyce... 29 0.28
SPAC23H3.08c |bub3||mitotic spindle checkpoint protein Bub3|Schi... 29 0.37
SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein Pop1... 28 0.49
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa... 28 0.49
SPAC343.17c |||WD repeat protein, human WDR70 family|Schizosacch... 27 0.86
SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|c... 27 1.1
SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces pombe... 27 1.1
SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces... 26 2.0
SPBC16A3.05c |rae1||RNA export factor Rae1|Schizosaccharomyces p... 25 3.5
SPBC215.15 |sec13||COPII-coated vesicle component Sec13|Schizosa... 25 4.6
SPBC1271.15c |||translation initiation factor IF-2Mt|Schizosacch... 25 4.6
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||... 25 6.1
SPAC10F6.15 |||S. pombe specific UPF0300 family protein 1|Schizo... 25 6.1
SPBP23A10.10 |ppk32||serine/threonine protein kinase Ppk32 |Schi... 24 8.0
SPBC119.16c |||conserved fungal protein|Schizosaccharomyces pomb... 24 8.0
SPAC664.15 |||CCR4-Not complex subunit Caf4/Mdv1 |Schizosaccharo... 24 8.0
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr... 24 8.0
>SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 922
Score = 38.3 bits (85), Expect = 5e-04
Identities = 28/81 (34%), Positives = 45/81 (55%), Gaps = 5/81 (6%)
Frame = +2
Query: 53 NADAVLAIECIEN---NFIAACLDGNVYHFNSDGQLLNTLRGSNLAVTCITIVKEKYGTT 223
++D + CI N + DG++ + DG+LL TL G AVT T+ +K GT
Sbjct: 62 DSDCSAKVTCIANFDEMYAVGYADGSIRLWK-DGELLITLNGHKSAVT--TMDFDKMGTR 118
Query: 224 VYTGSLDSRIRYYDL--ETGV 280
+ +GS+D+ I +D+ ETG+
Sbjct: 119 LASGSMDTDIIVWDIVAETGL 139
>SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein
Pop2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 703
Score = 36.7 bits (81), Expect = 0.001
Identities = 24/83 (28%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Frame = +2
Query: 41 TVTGNADAVLAIECIENNFIAACLDGNVYHFN-SDGQLLNTLRGSNLAVTCITIVKEKYG 217
T+ G+ D+V I + ++ D ++ + S G+ L LRG +L + + E+
Sbjct: 502 TLIGHTDSVRTISGYGDILVSGSYDSSIRIWRVSTGECLYHLRGHSLRIYSVLYEPER-- 559
Query: 218 TTVYTGSLDSRIRYYDLETGVEK 286
+GS+D IR +DL TG K
Sbjct: 560 NICISGSMDKSIRVWDLSTGTCK 582
>SPCC1672.07 |||U3 snoRNP-associated protein Utp21
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 902
Score = 33.5 bits (73), Expect = 0.013
Identities = 14/62 (22%), Positives = 32/62 (51%)
Frame = +2
Query: 179 AVTCITIVKEKYGTTVYTGSLDSRIRYYDLETGVEKGPECNVLSAIQTMDRAWDTIFVRY 358
++ +++ ++ T + GS+ S+ + ++ K PE LS+ T ++ WD + +
Sbjct: 359 SLRAVSLYQDSQSTELSQGSVISKAKKLNVRPEELKLPEITALSSSNTREKYWDNVLTAH 418
Query: 359 KN 364
KN
Sbjct: 419 KN 420
Score = 24.2 bits (50), Expect = 8.0
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +2
Query: 215 GTTVYTGSLDSRIRYYDLETG 277
G + T SLD IR +DL TG
Sbjct: 584 GRWLVTASLDGTIRTWDLPTG 604
>SPBP22H7.07 |prp5|cwf1|WD repeat protein Prp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 473
Score = 29.1 bits (62), Expect = 0.28
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = +2
Query: 146 QLLNTLRGSNLAVTCITIVKEKYGTTVYTGSLDSRIRYYDLETG 277
Q ++ L G V + + +++ V TGS+DS IR +DL G
Sbjct: 280 QNVHVLSGHKSTVASLAV--QEFDPQVVTGSMDSTIRLWDLAAG 321
>SPAC23H3.08c |bub3||mitotic spindle checkpoint protein
Bub3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 320
Score = 28.7 bits (61), Expect = 0.37
Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
Frame = +2
Query: 62 AVLAIECIENNFIAACLDGNVYHF--NSDGQLLNTLRGSNLAVTCITIVKEKYGTTVYTG 235
+V+ ++N IA C DG++ H+ + + +LL S+ + + EK T G
Sbjct: 17 SVIFSPSVKNELIAGCWDGSLLHYQISENPELLGKYDLSS-PILSLEYTDEK---TALVG 72
Query: 236 SLDSRIRYYDLET 274
+LD + DL T
Sbjct: 73 NLDGTVTTLDLNT 85
>SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein
Pop1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 775
Score = 28.3 bits (60), Expect = 0.49
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +2
Query: 206 EKYGTTVYTGSLDSRIRYYDLETG 277
E G T+ TGS D +R +DL TG
Sbjct: 453 EYVGDTLVTGSTDRTVRVWDLRTG 476
>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1628
Score = 28.3 bits (60), Expect = 0.49
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +2
Query: 137 SDGQLLNTLRGSNLAVTCITIVKEKYGTTVY 229
S +L NTL+ + LA + ++ +KY T +Y
Sbjct: 823 SSMRLFNTLQKNGLATQLLVLLSQKYSTCIY 853
>SPAC343.17c |||WD repeat protein, human WDR70
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 576
Score = 27.5 bits (58), Expect = 0.86
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = +2
Query: 167 GSNLAVTCITIVKEKYGTTVYTGSLDSRIRYYDL 268
G + VT T +K G+ YTGSLD+ I +DL
Sbjct: 87 GHSKIVTTTTF--DKNGSRFYTGSLDNTIHCWDL 118
>SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 502
Score = 27.1 bits (57), Expect = 1.1
Identities = 12/40 (30%), Positives = 24/40 (60%)
Frame = +2
Query: 158 TLRGSNLAVTCITIVKEKYGTTVYTGSLDSRIRYYDLETG 277
T++G V+C+ + + + TGS+D+ IR++D + G
Sbjct: 172 TMKGHTNWVSCVAWAPD--ASIIATGSMDNTIRFWDPKKG 209
>SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 488
Score = 27.1 bits (57), Expect = 1.1
Identities = 14/61 (22%), Positives = 31/61 (50%)
Frame = +2
Query: 92 NFIAACLDGNVYHFNSDGQLLNTLRGSNLAVTCITIVKEKYGTTVYTGSLDSRIRYYDLE 271
N +A L+ NVY +N+D ++ L ++ + ++ G+ + G + + YD+E
Sbjct: 192 NVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVE 251
Query: 272 T 274
+
Sbjct: 252 S 252
>SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 796
Score = 26.2 bits (55), Expect = 2.0
Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Frame = +2
Query: 89 NNFIAACLDGNVYHFNSDGQLLN-TLRGSNLAVTCITIVKEKYGTTVYTGSLDSRIRYYD 265
N F ++CLDG V ++ + N TL+ + V + + T D+ I+ +D
Sbjct: 155 NTFASSCLDGTVKVWSFGSSVANFTLQAHDRGVNYVNYYPAGDKPYLITAGDDNLIKVWD 214
Query: 266 LET 274
+T
Sbjct: 215 YQT 217
>SPBC16A3.05c |rae1||RNA export factor Rae1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 352
Score = 25.4 bits (53), Expect = 3.5
Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Frame = +2
Query: 179 AVTCITIVKEKYGTT--VYTGSLDSRIRYYDL 268
AV C+ V E GT+ + TGS D ++Y+DL
Sbjct: 117 AVRCVRFV-EAMGTSPILATGSWDKTLKYWDL 147
>SPBC215.15 |sec13||COPII-coated vesicle component
Sec13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 297
Score = 25.0 bits (52), Expect = 4.6
Identities = 16/48 (33%), Positives = 24/48 (50%)
Frame = +2
Query: 134 NSDGQLLNTLRGSNLAVTCITIVKEKYGTTVYTGSLDSRIRYYDLETG 277
N+ LL TLRG + V + K+GT + + S D + + ETG
Sbjct: 40 NNQQTLLETLRGHSGPVWQLGWAHPKFGTILASASYDGHVIVW-RETG 86
>SPBC1271.15c |||translation initiation factor
IF-2Mt|Schizosaccharomyces pombe|chr 2|||Manual
Length = 686
Score = 25.0 bits (52), Expect = 4.6
Identities = 9/28 (32%), Positives = 17/28 (60%)
Frame = +2
Query: 224 VYTGSLDSRIRYYDLETGVEKGPECNVL 307
+++G +DS + T ++KG EC +L
Sbjct: 634 IWSGEIDSLKHLKEEVTSIKKGRECGIL 661
>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 3227
Score = 24.6 bits (51), Expect = 6.1
Identities = 16/47 (34%), Positives = 23/47 (48%)
Frame = +2
Query: 110 LDGNVYHFNSDGQLLNTLRGSNLAVTCITIVKEKYGTTVYTGSLDSR 250
L GN N+ +LL+TL L+ +++ TT YT DSR
Sbjct: 2542 LFGNTLVMNTFSELLSTLTKPLLSFYKSEKLQKDSATTGYTNDQDSR 2588
>SPAC10F6.15 |||S. pombe specific UPF0300 family protein
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 432
Score = 24.6 bits (51), Expect = 6.1
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = -1
Query: 85 YALNSKDCISVPSNCNCI 32
Y +N +D ++ S CNCI
Sbjct: 224 YLVNPRDIFALGSTCNCI 241
>SPBP23A10.10 |ppk32||serine/threonine protein kinase Ppk32
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 749
Score = 24.2 bits (50), Expect = 8.0
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = +2
Query: 164 RGSNLAVTCITIVKEKYGTTVYTGSLDSRIR 256
+G+N V+ T K+ T + GS+DS ++
Sbjct: 40 KGTNEEVSVFTFDKKNLSTLLKRGSIDSNLK 70
>SPBC119.16c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 24.2 bits (50), Expect = 8.0
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = +2
Query: 257 YYDLETGVEKGPECNVLSAIQTMDRAWDTIFVRYKNWVCAAI*MQKQH 400
YY + VE S IQ +D TIF R+++ +C ++ + QH
Sbjct: 22 YYPGDFNVEGIEYLLFPSGIQELDNC--TIFFRFQDQLCLSVFSKLQH 67
>SPAC664.15 |||CCR4-Not complex subunit Caf4/Mdv1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 651
Score = 24.2 bits (50), Expect = 8.0
Identities = 8/18 (44%), Positives = 14/18 (77%)
Frame = +2
Query: 224 VYTGSLDSRIRYYDLETG 277
+Y+GS D+ +R +DL +G
Sbjct: 549 LYSGSYDNSVRIWDLRSG 566
>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1275
Score = 24.2 bits (50), Expect = 8.0
Identities = 13/50 (26%), Positives = 21/50 (42%)
Frame = -2
Query: 297 HSGPFSTPVSKS*YRILESSEPV*TVVPYFSFTIVMQVTAKLEPLKVFSS 148
HS P+ST S S Y + + PY + P++++SS
Sbjct: 183 HSSPYSTTSSTSLYSLYNDISLSCSPEPYLPLSPTRSPARTPSPIRLYSS 232
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,724,042
Number of Sequences: 5004
Number of extensions: 34705
Number of successful extensions: 106
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 142254980
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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