Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5115
         (412 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   3.1  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    21   4.1  
DQ855486-1|ABH88173.1|  104|Apis mellifera chemosensory protein ...    21   5.4  

>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.8 bits (44), Expect = 3.1
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = -2

Query: 171 EPLKVFSSWPSLLK 130
           +P+K+F  W S+L+
Sbjct: 441 QPIKLFEQWKSILE 454


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 21.4 bits (43), Expect = 4.1
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -1

Query: 409 GMSMLFLHSNCSTNPVLVPYEYSVP 335
           G  + FL    S+NP+ VPY   +P
Sbjct: 634 GFPLQFLVVISSSNPLNVPYGPVIP 658


>DQ855486-1|ABH88173.1|  104|Apis mellifera chemosensory protein 5
           protein.
          Length = 104

 Score = 21.0 bits (42), Expect = 5.4
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +1

Query: 85  RKQLHCSLSRW*C 123
           +KQLHC L R  C
Sbjct: 34  QKQLHCILDRGHC 46


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 117,976
Number of Sequences: 438
Number of extensions: 2825
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10379628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)