Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5114
(304 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 27 0.46
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 27 0.80
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||... 25 1.8
SPAC2G11.11c |prh1||ATP-dependent RNA helicase Prh1|Schizosaccha... 24 4.3
SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom... 24 5.6
SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein Pss1|Sch... 24 5.6
SPAC1705.02 |||human 4F5S homolog|Schizosaccharomyces pombe|chr ... 23 7.5
SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces ... 23 7.5
SPCC306.06c |||ER membrane protein, BIG1 family |Schizosaccharom... 23 9.9
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 23 9.9
SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 23 9.9
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos... 23 9.9
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo... 23 9.9
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 27.5 bits (58), Expect = 0.46
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +2
Query: 56 TEPIKFSNKKKNQSVSEKERKKL 124
T +KF NK S+ EKE KKL
Sbjct: 8 TTNVKFKNKVPQPSIKEKEAKKL 30
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 26.6 bits (56), Expect = 0.80
Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Frame = +2
Query: 23 VLLVEAISNYDTEPIKFSNKKK-NQSVSEKERKKLLRVIDFFKLIY*VIVILFICVNIKK 199
VLL ++T + +S + N+ V E R+ L + F V+V+ +++KK
Sbjct: 3682 VLLKNLKEKHETIRLAYSESQSINRKVDELIRRYKLSIKSFLS----VVVVFQHFISLKK 3737
Query: 200 SFDFLFFLALST 235
S+ F F ST
Sbjct: 3738 SYSFSFNFIWST 3749
>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 3227
Score = 25.4 bits (53), Expect = 1.8
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = +2
Query: 71 FSNKKKNQSVSEKERKKLLRVIDFFK 148
+SN+++ Q+V E R+ L V+ F+K
Sbjct: 1676 YSNEQQTQAVDEIRREVLTSVLKFYK 1701
>SPAC2G11.11c |prh1||ATP-dependent RNA helicase
Prh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 719
Score = 24.2 bits (50), Expect = 4.3
Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Frame = +2
Query: 65 IKFSNKKKNQSVSEKERKK-LLRVIDFFK 148
IK NKKKN+ S+ KK + V++F +
Sbjct: 29 IKAPNKKKNRKASKNTTKKSTVSVVNFLE 57
>SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1125
Score = 23.8 bits (49), Expect = 5.6
Identities = 8/23 (34%), Positives = 13/23 (56%)
Frame = -1
Query: 193 YVYANK*NNDYLINQFKKINYSQ 125
Y+Y + N ++N+ NYSQ
Sbjct: 311 YIYGGRDNKGLILNELWAFNYSQ 333
>SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein
Pss1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 720
Score = 23.8 bits (49), Expect = 5.6
Identities = 10/29 (34%), Positives = 19/29 (65%)
Frame = +2
Query: 53 DTEPIKFSNKKKNQSVSEKERKKLLRVID 139
+T P + + KK ++ V ++ KKL++V D
Sbjct: 513 ETSPEEEAEKKTDEPVKMRKVKKLVKVAD 541
>SPAC1705.02 |||human 4F5S homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 63
Score = 23.4 bits (48), Expect = 7.5
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -2
Query: 255 SAGSTEDVDRAKKNKKSK 202
S G+ DVDRA+ KKS+
Sbjct: 2 SRGNQRDVDRARNLKKSQ 19
>SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1150
Score = 23.4 bits (48), Expect = 7.5
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = +2
Query: 164 IVILFICVNIKKSFDFL 214
+V + +CVNI + FDF+
Sbjct: 901 VVFMKLCVNIWERFDFI 917
>SPCC306.06c |||ER membrane protein, BIG1 family
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 311
Score = 23.0 bits (47), Expect = 9.9
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = -2
Query: 273 LVYSKESAGSTEDVDRAKKN 214
L YSKES S E V AK+N
Sbjct: 98 LPYSKESLDSQELVHSAKQN 117
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 23.0 bits (47), Expect = 9.9
Identities = 16/53 (30%), Positives = 29/53 (54%)
Frame = +1
Query: 61 TNKIFK*KKESICQ*KRT*EVIESN*FF*IDLLSNRYSIYLRKHKKIF*LFIL 219
T+K+ K ++ S+ Q R V S+ F +D L RY + KHK + ++++
Sbjct: 231 TSKVEKLQRASLHQPVR---VAVSSKFSTVDTLIQRYLFFPFKHKDTYLVYLV 280
>SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 565
Score = 23.0 bits (47), Expect = 9.9
Identities = 8/12 (66%), Positives = 9/12 (75%)
Frame = -2
Query: 297 WCRQNCNRLVYS 262
WC QNC+ L YS
Sbjct: 159 WCCQNCDILNYS 170
>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
Rad50|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1290
Score = 23.0 bits (47), Expect = 9.9
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +1
Query: 217 LLSSVYVFCASCRLLGVNKSIAVLSAPTT 303
+L+ + + A LGVN I L PTT
Sbjct: 1188 VLACIIIRLALAECLGVNCGILALDEPTT 1216
>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1826
Score = 23.0 bits (47), Expect = 9.9
Identities = 10/39 (25%), Positives = 21/39 (53%)
Frame = -1
Query: 166 DYLINQFKKINYSQ*LLTFFFTDRLILFFI*KFYWFGII 50
D++I + + LL+ + L+LFF+ + W+ +I
Sbjct: 636 DFMIGASLCSHQPKFLLSLVYLTDLVLFFLDTYLWYMLI 674
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,089,722
Number of Sequences: 5004
Number of extensions: 18020
Number of successful extensions: 51
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 51
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 75747362
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -