Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5113
         (584 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase Ogm1|Schi...    29   0.38 
SPBC582.10c |||ATP-dependent DNA helicase Rhp16b |Schizosaccharo...    27   2.0  
SPBC30B4.06c |||tRNA uridine 5-carboxymethylaminomethyl modifica...    26   3.5  
SPBC106.03 |||DUF1776 family protein|Schizosaccharomyces pombe|c...    26   3.5  
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p...    25   6.2  
SPCC550.07 |||acetamidase |Schizosaccharomyces pombe|chr 3|||Manual    25   6.2  

>SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase
           Ogm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 893

 Score = 29.5 bits (63), Expect = 0.38
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = -3

Query: 426 LLRFDGGTNLYGLSIRHTNHPISKYKLAIVVHW 328
           L R++ G N +G S  H N+ I K+ +A ++HW
Sbjct: 593 LARWNLGYNDFGPSAFHYNYNIGKFVVAWLLHW 625


>SPBC582.10c |||ATP-dependent DNA helicase Rhp16b
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 830

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -3

Query: 369 HPISKYKLAIVVHWYDSQITMLPVL 295
           H  S+YKL  V+H YD  IT   +L
Sbjct: 319 HGASRYKLLKVIHEYDVVITTYQIL 343


>SPBC30B4.06c |||tRNA uridine 5-carboxymethylaminomethyl
           modification enzyme|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 666

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 16/48 (33%), Positives = 22/48 (45%)
 Frame = +1

Query: 283 NDTLENGQHRYLRIIPVDYDCQLVFTDRMVGMAYGKPVQVGTTIEAKQ 426
           N   E  QH  +R IP   +C +V     V   Y  P Q+  T+E K+
Sbjct: 332 NSMPEEIQHNIIRSIPGLENCNIVRPAYGVMYDYVIPTQLKATLETKK 379


>SPBC106.03 |||DUF1776 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 357

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +1

Query: 388 KPVQVGTTIEAKQHTEQFRFRFRVSIWVGAFTL 486
           +PV V TT  AK    +F ++ RVS+ +G+  L
Sbjct: 33  QPVTVHTTNSAKGRLGEFLYQNRVSVGLGSAAL 65


>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2280

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -3

Query: 126 ATHLEIQVLRSQYSHN 79
           A HLE+Q+L  QY +N
Sbjct: 306 ARHLEVQILADQYGNN 321


>SPCC550.07 |||acetamidase |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 533

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = +1

Query: 358 TDRMVGMAYGKPVQVGTTIEAKQHTEQFRFRFRVSI 465
           T  +VG  +G PV V   I  K HT    F  + +I
Sbjct: 117 TGSLVGPLHGVPVSVKEHISIKNHTATASFLAKANI 152


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,619,329
Number of Sequences: 5004
Number of extensions: 55462
Number of successful extensions: 135
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 252150250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)