Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5113
         (584 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0853 + 6982185-6983593,6985926-6986497,6987139-6988439           35   0.055
02_05_0952 + 33022742-33023125                                         29   2.7  
03_04_0065 + 16984736-16984835,16984932-16985369,16985511-169856...    28   6.3  

>07_01_0853 + 6982185-6983593,6985926-6986497,6987139-6988439
          Length = 1093

 Score = 34.7 bits (76), Expect = 0.055
 Identities = 17/35 (48%), Positives = 22/35 (62%)
 Frame = -2

Query: 283 LTSSTLGGKNDAIVGQVFACLVFYLLLRCVDGLAA 179
           L SSTLG    A+V  V+A L F LL+ CV G+ +
Sbjct: 788 LASSTLGATLGAVVAVVYAALSFSLLVACVAGIGS 822


>02_05_0952 + 33022742-33023125
          Length = 127

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
 Frame = +2

Query: 365 GWLVW--RMESPYKLVPPSKRSSIRNNLDLDFGSQYGWG 475
           G  VW  + E+P ++ P +  SS R+ +D+D  S  GWG
Sbjct: 13  GIRVWSTQPEAPPRIPPSTAPSSSRDPVDVDADSWAGWG 51


>03_04_0065 +
           16984736-16984835,16984932-16985369,16985511-16985635,
           16985747-16985881,16985954-16986012,16986082-16986843,
           16986973-16987118,16987151-16987251
          Length = 621

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 16/39 (41%), Positives = 22/39 (56%)
 Frame = -3

Query: 411 GGTNLYGLSIRHTNHPISKYKLAIVVHWYDSQITMLPVL 295
           G  N YGLS+ H N P S   L++ VH  ++ I + P L
Sbjct: 33  GVLNFYGLSLLHLN-PSSIAFLSVFVHLCEAYIGVEPFL 70


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,999,133
Number of Sequences: 37544
Number of extensions: 388683
Number of successful extensions: 826
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 800
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 826
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1376330256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)