Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5113
         (584 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M15039-1|AAA58994.1|   90|Homo sapiens immunoglobulin kappa chai...    30   5.2  
AY320566-1|AAQ21877.1|   77|Homo sapiens immunoglobulin kappa ch...    30   5.2  
AB064118-1|BAC01746.1|  276|Homo sapiens immunoglobulin kappa li...    30   6.9  

>M15039-1|AAA58994.1|   90|Homo sapiens immunoglobulin kappa chain
           protein.
          Length = 90

 Score = 30.3 bits (65), Expect = 5.2
 Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
 Frame = +3

Query: 57  RFEGWGSRCDYTETLELVSQGVWRIYVVDVYGLQ*P----LNTRWAARPS 194
           RF G GS  D+T T+  +    + +Y    YG   P    L T+ +ARPS
Sbjct: 20  RFSGSGSGTDFTLTISRLEPEDFAVYYCQQYGSSPPTVIQLETKTSARPS 69


>AY320566-1|AAQ21877.1|   77|Homo sapiens immunoglobulin kappa chain
           variable region protein.
          Length = 77

 Score = 30.3 bits (65), Expect = 5.2
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +3

Query: 57  RFEGWGSRCDYTETLELVSQGVWRIYVVDVYG 152
           RF GWGS  D+T T+  +    + +Y    YG
Sbjct: 40  RFSGWGSGTDFTLTISRLEPEDFAVYYCQQYG 71


>AB064118-1|BAC01746.1|  276|Homo sapiens immunoglobulin kappa light
           chain VLJ region protein.
          Length = 276

 Score = 29.9 bits (64), Expect = 6.9
 Identities = 22/76 (28%), Positives = 32/76 (42%)
 Frame = +3

Query: 57  RFEGWGSRCDYTETLELVSQGVWRIYVVDVYGLQ*PLNTRWAARPSTHLSNK*KTKQANT 236
           RF G GS  D+T T+  +    + +Y    YG   P    W          K + K+   
Sbjct: 84  RFSGSGSGTDFTLTISRLEPEDFAVYYCQQYGSSPP----WGPSVGFGGGTKVEIKRTVA 139

Query: 237 *PTIASFFPPSVEDVK 284
            P++   FPPS E +K
Sbjct: 140 APSV-FIFPPSDEQLK 154


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 98,303,361
Number of Sequences: 237096
Number of extensions: 2202247
Number of successful extensions: 9424
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 9337
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9424
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 6098631048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)