Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5113
         (584 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z77133-5|CAO82039.1|  237|Caenorhabditis elegans Hypothetical pr...    28   4.2  
Z82086-4|CAB04998.1|  329|Caenorhabditis elegans Hypothetical pr...    28   5.6  
Z93384-3|CAB07634.3| 1341|Caenorhabditis elegans Hypothetical pr...    27   9.8  
Z93384-2|CAE54901.1| 1320|Caenorhabditis elegans Hypothetical pr...    27   9.8  
U00063-3|AAK18959.2|  446|Caenorhabditis elegans Hypothetical pr...    27   9.8  

>Z77133-5|CAO82039.1|  237|Caenorhabditis elegans Hypothetical
           protein K03A11.6 protein.
          Length = 237

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +1

Query: 340 DCQLVFTDRMVGMAYGKPVQVGTTIE 417
           +C+  ++D    M YG  V VGTT+E
Sbjct: 40  NCENTYSDDACTMIYGSSVTVGTTVE 65


>Z82086-4|CAB04998.1|  329|Caenorhabditis elegans Hypothetical
           protein ZK228.7 protein.
          Length = 329

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = -1

Query: 467 HIETRNLNLNCSVCCFASMVVPTCTGFPYAIPTILSVNTSWQ 342
           H+ +  L++  S      + +P C+G+P  I  +L + TS Q
Sbjct: 56  HLVSATLDVFFSFLAAPVLTLPGCSGYPLGISLLLGIPTSIQ 97


>Z93384-3|CAB07634.3| 1341|Caenorhabditis elegans Hypothetical
           protein H08M01.2b protein.
          Length = 1341

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = -1

Query: 476 APTHIETRNLNLNCSVCCFASMVVPTCT 393
           A   +E RNL++ C      S  VP CT
Sbjct: 275 ASLFVEQRNLHVKCCFSTLLSQAVPLCT 302


>Z93384-2|CAE54901.1| 1320|Caenorhabditis elegans Hypothetical
           protein H08M01.2a protein.
          Length = 1320

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = -1

Query: 476 APTHIETRNLNLNCSVCCFASMVVPTCT 393
           A   +E RNL++ C      S  VP CT
Sbjct: 275 ASLFVEQRNLHVKCCFSTLLSQAVPLCT 302


>U00063-3|AAK18959.2|  446|Caenorhabditis elegans Hypothetical
           protein F56C9.3 protein.
          Length = 446

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +3

Query: 96  TLELVSQGVWRIYVVDVYGLQ*PLNTRW 179
           +++L+   V RI+   VYG++ P+N  W
Sbjct: 218 SVQLIISSVRRIHDAAVYGIKDPINVSW 245


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,779,698
Number of Sequences: 27780
Number of extensions: 323465
Number of successful extensions: 675
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 655
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 675
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1226509528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)