Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5111
         (614 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U21322-8|AAA62544.1|  662|Caenorhabditis elegans Abnormal embroy...    79   3e-15
AY079165-1|AAL86012.1|  585|Caenorhabditis elegans NADPH-depende...    71   5e-13
AL132858-12|CAB60480.1|  585|Caenorhabditis elegans Hypothetical...    71   5e-13
Z35595-6|CAA84637.1|  682|Caenorhabditis elegans Hypothetical pr...    60   9e-10
Z29560-9|CAA82661.3|  148|Caenorhabditis elegans Hypothetical pr...    30   1.1  
AF036693-5|AAK29787.1|  434|Caenorhabditis elegans Hypothetical ...    29   2.6  
AF099673-1|AAC97508.1|  315|Caenorhabditis elegans thymidylate s...    27   8.1  
AF016686-14|AAB66232.1|  288|Caenorhabditis elegans Hypothetical...    27   8.1  
AC006708-20|AAF60422.1|  312|Caenorhabditis elegans Hypothetical...    27   8.1  

>U21322-8|AAA62544.1|  662|Caenorhabditis elegans Abnormal
           embroygenesis protein 8 protein.
          Length = 662

 Score = 78.6 bits (185), Expect = 3e-15
 Identities = 58/198 (29%), Positives = 99/198 (50%), Gaps = 5/198 (2%)
 Frame = +2

Query: 2   LSKACTDQNDAAQLKELAIDSNK----YDDWRHLHYPHLAEVLAQFPSCRXXXXXXXXXX 169
           +S+ CTD  +   L +L+  + +    Y  +       + +VL    +C+          
Sbjct: 381 ISEYCTDDTEKEFLNKLSTANEEGLKEYARYIVKERRSIVDVLTDQKTCKPPIEYLLELL 440

Query: 170 XXXXXRFYSISSSPLAHPHRIHITCAVVVYRTQNGQGPMHYGVCSTYLQNLKPEDEALVF 349
                R+YSI+SSP  +  +I I CAVV  +   G   ++ GVC+ YL       ++ VF
Sbjct: 441 PRLQARYYSIASSPRLNEEKIAI-CAVVT-KYSIGDRDIN-GVCTRYLTTKDAGSKSPVF 497

Query: 350 IRRAPSFHMPKDLSAPLILVGPGSGIAPFRGFWHHRKHQIKNLIPNKQKPGPVWLFFGCR 529
           +R++ +  +P   +  +I++GPG+G APFRGF   R+   KN     ++ G + L++GCR
Sbjct: 498 VRKS-TMRLPHRTTTQVIMIGPGTGFAPFRGFLQDRQFH-KNA---GKEIGAMHLYYGCR 552

Query: 530 NRGMD-LYKEEKEKALAD 580
           +   D +YK+E  K   D
Sbjct: 553 HPDHDYIYKDELAKFQED 570


>AY079165-1|AAL86012.1|  585|Caenorhabditis elegans NADPH-dependent
           flavin reductase protein.
          Length = 585

 Score = 71.3 bits (167), Expect = 5e-13
 Identities = 47/139 (33%), Positives = 73/139 (52%)
 Frame = +2

Query: 185 RFYSISSSPLAHPHRIHITCAVVVYRTQNGQGPMHYGVCSTYLQNLKPEDEALVFIRRAP 364
           R +SI+S+P   P  + +  A V Y+++        G+CST++  LKP DE    IR   
Sbjct: 388 RAFSIASAP--SPFHLELLVAKVEYKSR--MADKRRGLCSTFISRLKPGDEVFCKIRPG- 442

Query: 365 SFHMPKDLSAPLILVGPGSGIAPFRGFWHHRKHQIKNLIPNKQKPGPVWLFFGCRNRGMD 544
           +F  P    AP+I +GPG+G+APFR  + HR       + +   PG   LFFGCR+   D
Sbjct: 443 TFKFPSP-EAPVICIGPGTGVAPFRSLFGHRS------LFSAHFPG--ILFFGCRSEHHD 493

Query: 545 LYKEEKEKALADGSIEQSF 601
            Y  ++   L+  ++  +F
Sbjct: 494 YYFSDEWPELSGVAVIPAF 512


>AL132858-12|CAB60480.1|  585|Caenorhabditis elegans Hypothetical
           protein Y113G7A.8 protein.
          Length = 585

 Score = 71.3 bits (167), Expect = 5e-13
 Identities = 47/139 (33%), Positives = 73/139 (52%)
 Frame = +2

Query: 185 RFYSISSSPLAHPHRIHITCAVVVYRTQNGQGPMHYGVCSTYLQNLKPEDEALVFIRRAP 364
           R +SI+S+P   P  + +  A V Y+++        G+CST++  LKP DE    IR   
Sbjct: 388 RAFSIASAP--SPFHLELLVAKVEYKSR--MADKRRGLCSTFISRLKPGDEVFCKIRPG- 442

Query: 365 SFHMPKDLSAPLILVGPGSGIAPFRGFWHHRKHQIKNLIPNKQKPGPVWLFFGCRNRGMD 544
           +F  P    AP+I +GPG+G+APFR  + HR       + +   PG   LFFGCR+   D
Sbjct: 443 TFKFPSP-EAPVICIGPGTGVAPFRSLFGHRS------LFSAHFPG--ILFFGCRSEHHD 493

Query: 545 LYKEEKEKALADGSIEQSF 601
            Y  ++   L+  ++  +F
Sbjct: 494 YYFSDEWPELSGVAVIPAF 512


>Z35595-6|CAA84637.1|  682|Caenorhabditis elegans Hypothetical
           protein C01G6.6a protein.
          Length = 682

 Score = 60.5 bits (140), Expect = 9e-10
 Identities = 51/204 (25%), Positives = 95/204 (46%), Gaps = 10/204 (4%)
 Frame = +2

Query: 2   LSKACTDQNDAAQLKELAIDSNKYDDWRHLHYP--HLAEVLAQFPSCRXXXXXXXXXXXX 175
           L+++ +D N+  +L EL       D    +  P   LA++L  FP+ +            
Sbjct: 392 LAESTSDPNEKRRLLELCSAQGMKDFTDFVRTPGLSLADMLFAFPNVKPPVDRLIELLPR 451

Query: 176 XXXRFYSISSSPLAHPHRIHITCAVVVYRTQNGQGPMHYGVCSTYLQNLKPEDEALVFIR 355
              R YS+SS       +  +  + + +   +G+     G+ + +L +L+  D+  V  +
Sbjct: 452 LIPRPYSMSSY---ENRKARLIYSEMEFPATDGRRHSRKGLATDWLNSLRIGDKVQVLGK 508

Query: 356 RAPSFHMP-----KDLSA--PLILVGPGSGIAPFRGFWHHRKHQIKNLIPNKQKPGPVWL 514
               F +P     K+ +   PL++VGPG+G++ F  F H  + ++K   P+     P  L
Sbjct: 509 EPARFRLPPLGMTKNSAGKLPLLMVGPGTGVSVFLSFLHFLR-KLKQDSPSDFVDVPRVL 567

Query: 515 FFGCRNRGMD-LYKEEKEKALADG 583
           FFGCR+  +D +Y  E E  +++G
Sbjct: 568 FFGCRDSSVDAIYMSELEMFVSEG 591


>Z29560-9|CAA82661.3|  148|Caenorhabditis elegans Hypothetical
           protein K03H1.9 protein.
          Length = 148

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
 Frame = +3

Query: 159 RLYYHRYSRGSTPYLHHH*RILIEFTSHALLLFT-GHRMDKARCIMEYALHT 311
           RL+Y R  R   P+ HHH ++L + T H+LL  T   R    +C+++  L T
Sbjct: 19  RLHY-RLHRLRHPF-HHHRKMLWQMTHHSLLHVTMSGRFQSIQCLLQNYLMT 68


>AF036693-5|AAK29787.1|  434|Caenorhabditis elegans Hypothetical
           protein C49A9.5 protein.
          Length = 434

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -2

Query: 511 PDRTWFLFVRYQILDLMLSVMPKSSER 431
           PD+ +FLF   +  D ++ V+PKS ER
Sbjct: 7   PDKKYFLFAARRADDQLILVVPKSGER 33


>AF099673-1|AAC97508.1|  315|Caenorhabditis elegans thymidylate
           synthase protein.
          Length = 315

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = -1

Query: 428 LYQSRGRQE*AVLINL*AYGSLVHVL*KL-GLRPPVL 321
           LYQ  G     V  NL +YG L H++ K+ GL+P  L
Sbjct: 214 LYQRSGDMGLGVPFNLASYGLLTHMIAKVCGLKPGTL 250


>AF016686-14|AAB66232.1|  288|Caenorhabditis elegans Hypothetical
           protein R07C3.2 protein.
          Length = 288

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +1

Query: 334 RSPSFHKTCTKLPYA*RFISTAYSC 408
           RSPS+H T   LP   +FIS  + C
Sbjct: 12  RSPSYHTTELSLPLYIKFISWDFDC 36


>AC006708-20|AAF60422.1|  312|Caenorhabditis elegans Hypothetical
           protein Y110A7A.4 protein.
          Length = 312

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = -1

Query: 428 LYQSRGRQE*AVLINL*AYGSLVHVL*KL-GLRPPVL 321
           LYQ  G     V  NL +YG L H++ K+ GL+P  L
Sbjct: 211 LYQRSGDMGLGVPFNLASYGLLTHMIAKVCGLKPGTL 247


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,973,892
Number of Sequences: 27780
Number of extensions: 329752
Number of successful extensions: 843
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 812
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 836
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1332243108
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)