Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5108
         (486 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z93373-2|CAN99669.1| 1671|Caenorhabditis elegans Hypothetical pr...    28   4.1  
Z93373-1|CAB07551.1| 1601|Caenorhabditis elegans Hypothetical pr...    28   4.1  
Z83111-3|CAB05536.1|  361|Caenorhabditis elegans Hypothetical pr...    27   5.5  
U41556-11|AAK39190.2|  365|Caenorhabditis elegans Hypothetical p...    27   7.2  
Z83120-8|CAE46678.2|  511|Caenorhabditis elegans Hypothetical pr...    27   9.5  
Z83120-7|CAB51466.2|  514|Caenorhabditis elegans Hypothetical pr...    27   9.5  
AY523516-1|AAR98638.1|  459|Caenorhabditis elegans acetylcholine...    27   9.5  
AY523515-1|AAR98637.1|  553|Caenorhabditis elegans acetylcholine...    27   9.5  
AF016442-6|AAB65914.1|  120|Caenorhabditis elegans Hypothetical ...    27   9.5  

>Z93373-2|CAN99669.1| 1671|Caenorhabditis elegans Hypothetical protein
            C01B9.1b protein.
          Length = 1671

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +1

Query: 190  CLKVFVTKIKYQKFNNR*INYLFVRYF 270
            CL  F+TK+K Q F N    ++F  +F
Sbjct: 1201 CLSTFLTKVKLQHFMNFTTEFIFAIHF 1227


>Z93373-1|CAB07551.1| 1601|Caenorhabditis elegans Hypothetical protein
            C01B9.1a protein.
          Length = 1601

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +1

Query: 190  CLKVFVTKIKYQKFNNR*INYLFVRYF 270
            CL  F+TK+K Q F N    ++F  +F
Sbjct: 1131 CLSTFLTKVKLQHFMNFTTEFIFAIHF 1157


>Z83111-3|CAB05536.1|  361|Caenorhabditis elegans Hypothetical
           protein F57G8.4 protein.
          Length = 361

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
 Frame = +3

Query: 252 SLRALFSN-TAHVTCY-FIFVKISVVINCF*FF 344
           SL+  FSN  A V  Y +IF  I ++INCF  F
Sbjct: 6   SLQLFFSNLVATVGAYEYIFATIELMINCFHIF 38


>U41556-11|AAK39190.2|  365|Caenorhabditis elegans Hypothetical
           protein C25B8.5 protein.
          Length = 365

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
 Frame = +2

Query: 101 HINELNRQSY*ELSNKYLCYVITFYDYIEIALKCL-*QKLNIRNLI 235
           H NEL  + +  L  K+LC V+ ++++I +A+  L    LN+  LI
Sbjct: 44  HPNELLIRKHDFLQQKHLCAVVHYFNWIGLAVSGLSLTLLNVDKLI 89


>Z83120-8|CAE46678.2|  511|Caenorhabditis elegans Hypothetical
           protein R06A4.10b protein.
          Length = 511

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +3

Query: 255 LRALFSNTAHVTCYFIFVKISVVINCF*FFFYCLCRQT 368
           L AL      +T  FIFV  S+ IN   FF++ +   T
Sbjct: 471 LAALLERIFLITFLFIFVLTSIGINLIGFFYWWMAPDT 508


>Z83120-7|CAB51466.2|  514|Caenorhabditis elegans Hypothetical
           protein R06A4.10a protein.
          Length = 514

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +3

Query: 255 LRALFSNTAHVTCYFIFVKISVVINCF*FFFYCLCRQT 368
           L AL      +T  FIFV  S+ IN   FF++ +   T
Sbjct: 474 LAALLERIFLITFLFIFVLTSIGINLIGFFYWWMAPDT 511


>AY523516-1|AAR98638.1|  459|Caenorhabditis elegans acetylcholine
           receptor alternativevariant b protein.
          Length = 459

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +3

Query: 255 LRALFSNTAHVTCYFIFVKISVVINCF*FFFYCLCRQT 368
           L AL      +T  FIFV  S+ IN   FF++ +   T
Sbjct: 419 LAALLERIFLITFLFIFVLTSIGINLIGFFYWWMAPDT 456


>AY523515-1|AAR98637.1|  553|Caenorhabditis elegans acetylcholine
           receptor 20 (63.9kD) alternative variant a protein.
          Length = 553

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +3

Query: 255 LRALFSNTAHVTCYFIFVKISVVINCF*FFFYCLCRQT 368
           L AL      +T  FIFV  S+ IN   FF++ +   T
Sbjct: 513 LAALLERIFLITFLFIFVLTSIGINLIGFFYWWMAPDT 550


>AF016442-6|AAB65914.1|  120|Caenorhabditis elegans Hypothetical
           protein K12B6.6 protein.
          Length = 120

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +1

Query: 151 FMLRNHFLRLH*NCLKVFVTKIKY 222
           F  R HFLR++  C   FVT I Y
Sbjct: 74  FQFRLHFLRVNLVCAVTFVTDIHY 97


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,106,965
Number of Sequences: 27780
Number of extensions: 192349
Number of successful extensions: 379
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 378
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 379
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 903458030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)