Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5108
         (486 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    24   0.99 
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     22   4.0  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    21   5.3  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   5.3  
S78459-1|AAB34403.1|   50|Apis mellifera mast cell-degranulating...    21   7.0  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    21   9.2  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 23.8 bits (49), Expect = 0.99
 Identities = 14/49 (28%), Positives = 23/49 (46%)
 Frame = +2

Query: 5    LKTFLMTGHIPKL*DIEDLKLIQPLKFLPDLLHINELNRQSY*ELSNKY 151
            L   L + +  +L  +E+L   + LK      H N+LNRQ    +  +Y
Sbjct: 1114 LAKVLTSSNSGQLISVENLLAQKGLKLATTASHANQLNRQGKQVIQTQY 1162


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 21.8 bits (44), Expect = 4.0
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +2

Query: 362 ADERTAHLMVSDYRRPWTSSMPGAEPSRCLPLNTL 466
           ++  ++ L +SD  +P TS    AEPS     N +
Sbjct: 539 SENLSSGLSISDSTKPETSKGINAEPSNIEESNNM 573


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 21.4 bits (43), Expect = 5.3
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -3

Query: 331 QFITTLIFTNMK*HVTCAV 275
           ++IT LI  ++K H TC V
Sbjct: 313 KYITPLIQKHLKIHDTCGV 331


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.4 bits (43), Expect = 5.3
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +2

Query: 125 SY*ELSNKYLCYVITF 172
           SY  LS   LCY++TF
Sbjct: 695 SYVLLSGILLCYLVTF 710


>S78459-1|AAB34403.1|   50|Apis mellifera mast cell-degranulating
           peptide protein.
          Length = 50

 Score = 21.0 bits (42), Expect = 7.0
 Identities = 9/31 (29%), Positives = 15/31 (48%)
 Frame = +3

Query: 240 INKLSLRALFSNTAHVTCYFIFVKISVVINC 332
           I+ L     F +   +T YF+   +S+  NC
Sbjct: 2   ISMLRCTFFFLSVILITSYFVTPTMSIKCNC 32


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 20.6 bits (41), Expect = 9.2
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = +3

Query: 408 HGLHQCQEQSQAAA 449
           H ++Q Q+QSQAA+
Sbjct: 201 HMMYQQQQQSQAAS 214


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 121,972
Number of Sequences: 438
Number of extensions: 2513
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13297932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)