Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5107
         (682 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T...    28   1.1  
SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5 |Sc...    27   2.5  
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity...    27   3.3  
SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit Pst...    26   5.8  

>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 988

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
 Frame = +3

Query: 273 PTVSQQSANTLPALFLR-WPLLNRTLSNLTLIK*GRIDSNICLYLKTKQKKKFLNSS 440
           P VSQ +   +P   L+ +PL+ +T   L  I   ++ ++ C Y+ T   +K L+ S
Sbjct: 283 PLVSQSTV--VPKRLLKVYPLIEQTAKRLHRISLSKVYNHYCPYIDTHDDEKILSYS 337


>SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 632

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +2

Query: 80  FLSGGQSEEEASVHLNAINAVDLKRPWV 163
           FL+   S E A VH+  +N  D    WV
Sbjct: 525 FLTNSNSSESALVHMQKLNLPDFTPSWV 552


>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
           factor complex subunit Ctf1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 363

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -2

Query: 537 SLYQS*MAFNR*KCIKNISLPTYQILNSLT 448
           ++Y S MA N  K I + S+P Y   NS+T
Sbjct: 140 AIYSSSMATNLNKNINSTSVPAYNFHNSMT 169


>SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit
           Pst2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1075

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = +1

Query: 349 QISRLLNEDELILTFVCI*KQNKKKSFLIQV 441
           +I +LLN DE++  F  I   NK KSF I++
Sbjct: 894 EIEKLLNPDEILFRFCWI---NKFKSFGIKI 921


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,369,173
Number of Sequences: 5004
Number of extensions: 44954
Number of successful extensions: 105
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)