Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5107
(682 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1721 - 39426957-39428005,39428812-39428839 139 2e-33
06_03_0718 + 23840198-23840409,23841368-23841518,23842190-238422... 134 8e-32
05_04_0255 + 19462668-19462695,19463443-19464491 126 1e-29
08_01_0142 - 1121762-1122822,1123087-1123114 123 2e-28
11_01_0448 - 3469398-3469676,3470015-3470284,3470386-3470476,347... 113 9e-26
12_01_0448 + 3537661-3538018,3538920-3539047,3539740-3539763,354... 46 3e-05
03_01_0169 + 1385813-1388359 34 0.12
06_02_0238 - 13357877-13357954,13358186-13358302,13358537-133586... 32 0.48
01_07_0274 + 42428947-42429108,42429405-42430178 30 2.0
01_06_0778 - 31920956-31921502,31921639-31921771,31922287-319223... 28 6.0
08_02_1257 - 25646029-25646054,25646139-25646236,25646609-256467... 28 7.9
08_01_0565 + 5026308-5026730 28 7.9
04_04_0869 - 28883688-28884983 28 7.9
>01_06_1721 - 39426957-39428005,39428812-39428839
Length = 358
Score = 139 bits (337), Expect = 2e-33
Identities = 67/120 (55%), Positives = 85/120 (70%)
Frame = +2
Query: 5 TPNDVARATVTALLRTVPAAVPGVTFLSGGQSEEEASVHLNAINAVDLKRPWVLTFSYGR 184
+P +A TV AL RTVPAAVP + FLSGGQSEEEA+V+LNA+N + K+PW L+FS+GR
Sbjct: 239 SPQLIAEYTVRALQRTVPAAVPAIVFLSGGQSEEEATVNLNAMNKLSTKKPWALSFSFGR 298
Query: 185 ALQASVLRAWGGKTENVLAGQQELIKRAKANGLAAVGKYVAGSIPSLAASKSNFVKSHAY 364
ALQ S L+AWGGKTENV+ Q+ I R KAN A +G Y ++ AS+S VK + Y
Sbjct: 299 ALQQSTLKAWGGKTENVVKAQKAFITRCKANSEATLGTYQGDAVLGEGASESLHVKDYKY 358
>06_03_0718 +
23840198-23840409,23841368-23841518,23842190-23842294,
23843476-23843608,23844164-23844849,23844937-23845299
Length = 549
Score = 134 bits (323), Expect = 8e-32
Identities = 64/116 (55%), Positives = 81/116 (69%)
Frame = +2
Query: 17 VARATVTALLRTVPAAVPGVTFLSGGQSEEEASVHLNAINAVDLKRPWVLTFSYGRALQA 196
+ TV AL RTVP AVPG+ FLSGGQSEEEAS +LNA+N +++ +PW LTFS+GRALQ
Sbjct: 435 IGEYTVAALRRTVPPAVPGIVFLSGGQSEEEASQNLNAMNKLEVLKPWTLTFSFGRALQQ 494
Query: 197 SVLRAWGGKTENVLAGQQELIKRAKANGLAAVGKYVAGSIPSLAASKSNFVKSHAY 364
S ++ WGGK ENV A Q + R KAN A +GKY G+ A S+S +VK + Y
Sbjct: 495 STIKKWGGKKENVAAAQAAFLARCKANSEATLGKY-GGAAGDAATSESLYVKGYTY 549
>05_04_0255 + 19462668-19462695,19463443-19464491
Length = 358
Score = 126 bits (305), Expect = 1e-29
Identities = 60/120 (50%), Positives = 80/120 (66%)
Frame = +2
Query: 5 TPNDVARATVTALLRTVPAAVPGVTFLSGGQSEEEASVHLNAINAVDLKRPWVLTFSYGR 184
+P +A TV L RTVPAAVP + FLSGGQSEEEA+++LNA+N + K+PW L+FS+GR
Sbjct: 239 SPEVIAEYTVRTLQRTVPAAVPAIVFLSGGQSEEEATLNLNAMNKLSTKKPWSLSFSFGR 298
Query: 185 ALQASVLRAWGGKTENVLAGQQELIKRAKANGLAAVGKYVAGSIPSLAASKSNFVKSHAY 364
ALQ S L+AW GK EN+ + + R KAN A +G Y ++ AS+S VK + Y
Sbjct: 299 ALQQSTLKAWSGKAENIEKARAAFLTRCKANSEATLGTYKGDAVLGEGASESLHVKDYKY 358
>08_01_0142 - 1121762-1122822,1123087-1123114
Length = 362
Score = 123 bits (296), Expect = 2e-28
Identities = 64/121 (52%), Positives = 78/121 (64%), Gaps = 2/121 (1%)
Frame = +2
Query: 8 PNDVARATVTALLRTVPAAVPGVTFLSGGQSEEEASVHLNAINAVDL--KRPWVLTFSYG 181
P VA TV ALLRTVP AVP + FLSGGQSEEEA+ +LNA+N V K+PW LTFS+G
Sbjct: 242 PEVVAEHTVRALLRTVPPAVPAIVFLSGGQSEEEATRNLNAMNQVASRGKKPWSLTFSFG 301
Query: 182 RALQASVLRAWGGKTENVLAGQQELIKRAKANGLAAVGKYVAGSIPSLAASKSNFVKSHA 361
RALQ S L+AW GK ENV Q L+ R +AN A +G Y + S++ VK +
Sbjct: 302 RALQQSTLKAWAGKAENVGKAQAALLARCRANSQATLGAYAGDAAAGEGVSENLHVKDYK 361
Query: 362 Y 364
Y
Sbjct: 362 Y 362
>11_01_0448 -
3469398-3469676,3470015-3470284,3470386-3470476,
3470581-3470690,3470867-3471136,3471768-3471914
Length = 388
Score = 113 bits (273), Expect = 9e-26
Identities = 59/120 (49%), Positives = 78/120 (65%)
Frame = +2
Query: 5 TPNDVARATVTALLRTVPAAVPGVTFLSGGQSEEEASVHLNAINAVDLKRPWVLTFSYGR 184
TP V+ T+ L R +P AVPG+ FLSGGQSE EA+ +LNA+N PW ++FSY R
Sbjct: 272 TPEQVSDYTLKLLHRRIPPAVPGIMFLSGGQSEVEATQNLNAMNQGP--NPWHVSFSYAR 329
Query: 185 ALQASVLRAWGGKTENVLAGQQELIKRAKANGLAAVGKYVAGSIPSLAASKSNFVKSHAY 364
ALQ + L+ WGG+ ENV A Q L+ RAKAN LA +GKY + + A + FVK++ Y
Sbjct: 330 ALQNTCLKTWGGQPENVKAAQDALLLRAKANSLAQLGKYTSDG-EAAEAKEGMFVKNYVY 388
>12_01_0448 +
3537661-3538018,3538920-3539047,3539740-3539763,
3542051-3542317,3542994-3543530
Length = 437
Score = 46.0 bits (104), Expect = 3e-05
Identities = 25/54 (46%), Positives = 33/54 (61%), Gaps = 3/54 (5%)
Frame = +2
Query: 119 HLNAIN-AVDLKRPWV--LTFSYGRALQASVLRAWGGKTENVLAGQQELIKRAK 271
+LNA+N A PW ++FSY RALQ + L+ WG + ENV A Q EL A+
Sbjct: 356 NLNAMNQAAPSANPWRWRVSFSYARALQNTCLKTWGSRRENVAAAQGELAGAAR 409
>03_01_0169 + 1385813-1388359
Length = 848
Score = 33.9 bits (74), Expect = 0.12
Identities = 21/49 (42%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Frame = +3
Query: 174 ATGAPSRLRCSAPGEGRPRTFSPDSRS*SSVLR-PTVSQQSANTLPALF 317
A GA S + S PG+ RTF PD+ SS R P V+ +NT+P L+
Sbjct: 27 ACGAASNV--SFPGDSPARTFVPDAPFLSSAGRVPAVTSTGSNTIPPLY 73
>06_02_0238 -
13357877-13357954,13358186-13358302,13358537-13358641,
13359301-13359393,13359801-13359888,13359979-13360028,
13361147-13361205,13361297-13361516,13361611-13361691,
13364034-13364111,13364203-13364298,13364370-13364435
Length = 376
Score = 31.9 bits (69), Expect = 0.48
Identities = 19/59 (32%), Positives = 31/59 (52%)
Frame = +2
Query: 26 ATVTALLRTVPAAVPGVTFLSGGQSEEEASVHLNAINAVDLKRPWVLTFSYGRALQASV 202
A VTALL +VP + P SGG+ + + LN + +D+ R ++L G ++ V
Sbjct: 131 AAVTALLCSVPISGPSDAASSGGKDKAKKPTRLNIV-GLDITRQFLLHIVSGTDVEKDV 188
>01_07_0274 + 42428947-42429108,42429405-42430178
Length = 311
Score = 29.9 bits (64), Expect = 2.0
Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Frame = -2
Query: 249 CCPARTFSVFPPQARSTE-AWRARP*LNVRTQGLLRSTALIAFRCTEASSSDWPPERNVT 73
C PA + +PP A+ + R T G ++ L+A TEAS D PP +
Sbjct: 23 CAPAASAGDYPPTAKGLSYGFYQRSCPKAETIGC-DASVLLARTATEASELDAPPNETIR 81
Query: 72 P 70
P
Sbjct: 82 P 82
>01_06_0778 -
31920956-31921502,31921639-31921771,31922287-31922374,
31922857-31923198
Length = 369
Score = 28.3 bits (60), Expect = 6.0
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = -2
Query: 123 RCTEASSSDWPPERNV 76
RC EA S WPP R+V
Sbjct: 64 RCVEAGSERWPPRRDV 79
>08_02_1257 -
25646029-25646054,25646139-25646236,25646609-25646700,
25646786-25646893,25647212-25647346,25647648-25647752,
25647951-25648088,25648865-25648963,25649079-25649195,
25649446-25649610,25649955-25650014,25650395-25650559,
25650636-25650746,25651220-25651333,25651466-25651531,
25651857-25651994,25652303-25652386,25652468-25652510,
25652621-25652676,25652772-25652880,25652944-25653026,
25653127-25653210,25653383-25653454,25653557-25653634,
25653717-25653800,25653892-25653962,25654095-25654164,
25654314-25654403,25654500-25654661,25654702-25654817,
25654946-25654988,25655069-25655185,25655897-25656046
Length = 1082
Score = 27.9 bits (59), Expect = 7.9
Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
Frame = +2
Query: 470 YVGKDIFLMHFYRL--NAIYD*YSETFFFHNTFLKTIIESSIIKGGNRCIWTIFFIDMSI 643
Y G IFL F + AI D F H K I+ +++GG RC +IF + +
Sbjct: 233 YDGGSIFLAVFLVILVTAISDYRQSLQFRHLNEEKQNIQVEVVRGGKRCGTSIFDLVVGD 292
Query: 644 QIDLNI 661
+ L I
Sbjct: 293 VVPLKI 298
>08_01_0565 + 5026308-5026730
Length = 140
Score = 27.9 bits (59), Expect = 7.9
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +2
Query: 233 VLAGQQELIKRAKANGLAAVGKYVAGSIPSLAASKSNFVK 352
VLAG +I K+N AA G S+P+ A S++++
Sbjct: 42 VLAGASLIIAGVKSNATAAAGNPSVFSLPAAGAIASSYLR 81
>04_04_0869 - 28883688-28884983
Length = 431
Score = 27.9 bits (59), Expect = 7.9
Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 4/70 (5%)
Frame = -1
Query: 349 DKVRFRSGQRRNRAGNVFADCCETVGLSTLDQLLLSGENVLGLPS----PGAEHRSLEGA 182
D V +G ++R + D TV + T+D +LL E G PS PG +
Sbjct: 290 DDVSMDTGMDKSRVASTVLDDTPTV-IHTVDSVLLPPELFGGAPSPAPAPGPASDVPAAS 348
Query: 181 PVAERQNPGP 152
P E +P P
Sbjct: 349 PAPEGSSPAP 358
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,353,138
Number of Sequences: 37544
Number of extensions: 293557
Number of successful extensions: 819
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 795
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 817
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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