Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5106
         (491 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24H6.04 |hxk1||hexokinase 1 |Schizosaccharomyces pombe|chr 1...    53   2e-08
SPAC4F8.07c |hxk2||hexokinase 2 |Schizosaccharomyces pombe|chr 1...    46   4e-06
SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo...    26   3.5  
SPAC644.13c |||Rab GTPase binding |Schizosaccharomyces pombe|chr...    25   4.7  

>SPAC24H6.04 |hxk1||hexokinase 1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 484

 Score = 53.2 bits (122), Expect = 2e-08
 Identities = 25/51 (49%), Positives = 31/51 (60%)
 Frame = +2

Query: 335 LRRVAEVFEKEIEAGLRQQPSSLQMENTYVPELPDGTEEGSFLALDLGGTN 487
           L RV + F  E+  GL   P  + M  T++   PDG E GS+LALDLGGTN
Sbjct: 45  LHRVTDRFVSELYKGLTTNPGDVPMVPTWIIGTPDGNEHGSYLALDLGGTN 95


>SPAC4F8.07c |hxk2||hexokinase 2 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 455

 Score = 45.6 bits (103), Expect = 4e-06
 Identities = 21/52 (40%), Positives = 30/52 (57%)
 Frame = +2

Query: 332 TLRRVAEVFEKEIEAGLRQQPSSLQMENTYVPELPDGTEEGSFLALDLGGTN 487
           +LR   + F++  + GL++    L M   ++  LP G E G FLALD GGTN
Sbjct: 22  SLREAVKEFDELRQKGLQKNGEVLAMAPAFISTLPTGAETGDFLALDFGGTN 73


>SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1616

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +3

Query: 6    SESVVTRHSVSFRRESTRNHAFDS 77
            +E+VV  HS+ F    T  H F+S
Sbjct: 1312 AENVVENHSLDFLNRGTMQHMFES 1335


>SPAC644.13c |||Rab GTPase binding |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 225

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = -1

Query: 464 LGTSLPLFRQ-AILGHKYFPFASSKVVVGVPPRFLSRTPL 348
           LG ++ +F+   ILG+  FP   + +V    P    R P+
Sbjct: 141 LGANISIFQSMCILGYSSFPLMIASIVCAFVPLIFIRIPV 180


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,110,585
Number of Sequences: 5004
Number of extensions: 41561
Number of successful extensions: 102
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 192109570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)