Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5106
(491 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z75535-3|CAH04733.1| 495|Caenorhabditis elegans Hypothetical pr... 63 1e-10
Z75535-2|CAA99826.1| 500|Caenorhabditis elegans Hypothetical pr... 62 3e-10
Z92797-1|CAB07234.1| 552|Caenorhabditis elegans Hypothetical pr... 58 3e-09
AC024214-19|AAF36071.1| 451|Caenorhabditis elegans Hypothetical... 57 8e-09
Z74039-9|CAA98507.1| 564|Caenorhabditis elegans Hypothetical pr... 29 2.4
U19747-1|AAA92689.1| 564|Caenorhabditis elegans nicotinic acety... 29 2.4
U19746-1|AAA92688.1| 564|Caenorhabditis elegans nicotinic acety... 29 2.4
Z73897-1|CAA98062.1| 344|Caenorhabditis elegans Hypothetical pr... 28 3.2
CU457740-4|CAM36334.1| 735|Caenorhabditis elegans Hypothetical ... 27 7.4
AF099922-5|AAK21406.1| 401|Caenorhabditis elegans Hypothetical ... 27 7.4
AF016428-7|AAB65361.1| 439|Caenorhabditis elegans Dnaj domain (... 27 7.4
U67951-5|AAB07574.2| 778|Caenorhabditis elegans Degeneration of... 27 9.8
L34414-1|AAA99524.1| 778|Caenorhabditis elegans degenerin protein. 27 9.8
>Z75535-3|CAH04733.1| 495|Caenorhabditis elegans Hypothetical
protein F14B4.2b protein.
Length = 495
Score = 62.9 bits (146), Expect = 1e-10
Identities = 32/70 (45%), Positives = 43/70 (61%), Gaps = 2/70 (2%)
Frame = +2
Query: 287 QKIEARLSKLMLCGSTLRRVAEVFEKEIEAGLRQQPS--SLQMENTYVPELPDGTEEGSF 460
Q I+ +L+L LRR+ + EK +E GL +++M TYV +P+GTE G F
Sbjct: 32 QMIQEACQRLVLSDQQLRRIMQSMEKSMEQGLATSTKKVAVKMLPTYVDSVPNGTESGDF 91
Query: 461 LALDLGGTNF 490
LALDLGGTNF
Sbjct: 92 LALDLGGTNF 101
>Z75535-2|CAA99826.1| 500|Caenorhabditis elegans Hypothetical
protein F14B4.2a protein.
Length = 500
Score = 61.7 bits (143), Expect = 3e-10
Identities = 35/82 (42%), Positives = 46/82 (56%), Gaps = 2/82 (2%)
Frame = +2
Query: 251 PTPLKLENRLRAQKIEARLSKLMLCGSTLRRVAEVFEKEIEAGLRQQPS--SLQMENTYV 424
P PL L I+ +L+L LRR+ + EK +E GL +++M TYV
Sbjct: 27 PPPLVLSRP--KDLIQEACQRLVLSDQQLRRIMQSMEKSMEQGLATSTKKVAVKMLPTYV 84
Query: 425 PELPDGTEEGSFLALDLGGTNF 490
+P+GTE G FLALDLGGTNF
Sbjct: 85 DSVPNGTESGDFLALDLGGTNF 106
>Z92797-1|CAB07234.1| 552|Caenorhabditis elegans Hypothetical
protein H25P06.1 protein.
Length = 552
Score = 58.0 bits (134), Expect = 3e-09
Identities = 32/83 (38%), Positives = 52/83 (62%), Gaps = 5/83 (6%)
Frame = +2
Query: 254 TPL-KLENRLRAQKI--EARLSKLMLCGSTLRRVAEVFEKEIEAGLRQ--QPSSLQMENT 418
TPL K+ ++L + I E+ +++ L +TLRR+ ++ GL + S++ M +
Sbjct: 31 TPLAKMASKLNEESISLESVMAEFKLSNTTLRRMMSHLSDNMDRGLESGLERSTIAMLPS 90
Query: 419 YVPELPDGTEEGSFLALDLGGTN 487
+VPELP+G E G F+A+DLGGTN
Sbjct: 91 FVPELPNGKERGKFVAMDLGGTN 113
>AC024214-19|AAF36071.1| 451|Caenorhabditis elegans Hypothetical
protein Y77E11A.1 protein.
Length = 451
Score = 56.8 bits (131), Expect = 8e-09
Identities = 28/67 (41%), Positives = 44/67 (65%), Gaps = 1/67 (1%)
Frame = +2
Query: 290 KIEARLSKLMLCGSTLRRVAEVFEKEIEAGL-RQQPSSLQMENTYVPELPDGTEEGSFLA 466
++E L+K L L+ ++E E++++ GL + Q SS+ M +YVP LPDGTE G ++A
Sbjct: 7 EVEEILAKFRLNREQLQEISEKVEQQMKMGLAKTQGSSIAMLPSYVPALPDGTETGKYVA 66
Query: 467 LDLGGTN 487
+DL G N
Sbjct: 67 IDLSGKN 73
>Z74039-9|CAA98507.1| 564|Caenorhabditis elegans Hypothetical
protein K03B8.9 protein.
Length = 564
Score = 28.7 bits (61), Expect = 2.4
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = +2
Query: 281 RAQKIEARLSKLMLCGSTLRRVAEVFEKEIEAGLRQQPSSLQME 412
+A E +S L + LRR + VF KE++ R++ SL+ E
Sbjct: 475 KATMWEGTMSALAGTNTQLRRTSNVFNKEVDEMRRKRQCSLEWE 518
>U19747-1|AAA92689.1| 564|Caenorhabditis elegans nicotinic
acetylcholine receptoralpha subunit precursor protein.
Length = 564
Score = 28.7 bits (61), Expect = 2.4
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = +2
Query: 281 RAQKIEARLSKLMLCGSTLRRVAEVFEKEIEAGLRQQPSSLQME 412
+A E +S L + LRR + VF KE++ R++ SL+ E
Sbjct: 475 KATMWEGTMSALAGTNTQLRRTSNVFNKEVDEMRRKRQCSLEWE 518
>U19746-1|AAA92688.1| 564|Caenorhabditis elegans nicotinic
acetylcholine receptoralpha subunit protein.
Length = 564
Score = 28.7 bits (61), Expect = 2.4
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = +2
Query: 281 RAQKIEARLSKLMLCGSTLRRVAEVFEKEIEAGLRQQPSSLQME 412
+A E +S L + LRR + VF KE++ R++ SL+ E
Sbjct: 475 KATMWEGTMSALAGTNTQLRRTSNVFNKEVDEMRRKRQCSLEWE 518
>Z73897-1|CAA98062.1| 344|Caenorhabditis elegans Hypothetical
protein ZK617.2 protein.
Length = 344
Score = 28.3 bits (60), Expect = 3.2
Identities = 12/34 (35%), Positives = 22/34 (64%)
Frame = +1
Query: 106 SHRCFNASSSENHVQGHVCCGRKSAYRRN*AGEW 207
S++ FN +S+ + V G++ CG+K++ A EW
Sbjct: 224 SYKAFNLASTADFVVGYMACGKKASEFTG-AHEW 256
>CU457740-4|CAM36334.1| 735|Caenorhabditis elegans Hypothetical
protein C50E10.4 protein.
Length = 735
Score = 27.1 bits (57), Expect = 7.4
Identities = 31/117 (26%), Positives = 49/117 (41%), Gaps = 3/117 (2%)
Frame = +2
Query: 137 RTTFKDMSAAVENQRTVEIELVNGHGGADPRKWEDLFLPTPLKLE---NRLRAQKIEARL 307
R TF+ ++ ++ T E E++ H P LP KL+ NR R I R
Sbjct: 105 RQTFEPTNSIIKVLNTAEEEML--HEKVVP-------LPVSSKLQYYLNRGRYDTIFDRD 155
Query: 308 SKLMLCGSTLRRVAEVFEKEIEAGLRQQPSSLQMENTYVPELPDGTEEGSFLALDLG 478
+L + + EK + + L Q ++ E P DG++E L +DLG
Sbjct: 156 EQLQRTADPMADEPDHVEKRVTSILEQASREME-EGEVEPVFYDGSDEDQELPIDLG 211
>AF099922-5|AAK21406.1| 401|Caenorhabditis elegans Hypothetical
protein F56F11.2 protein.
Length = 401
Score = 27.1 bits (57), Expect = 7.4
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = +2
Query: 74 FSLFNRPSRYFLIVVLTLAHQRTTFKDMSAAVENQRTVEIELVN 205
FS + RY ++ L +A + TF +EN T ++ L+N
Sbjct: 62 FSTLSPDFRYIYVLFLRVAREMATFAVQRFDLENNGTADLFLLN 105
>AF016428-7|AAB65361.1| 439|Caenorhabditis elegans Dnaj domain
(prokaryotic heat shockprotein) protein 19 protein.
Length = 439
Score = 27.1 bits (57), Expect = 7.4
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +2
Query: 206 GHGGADPRKWEDLFLPTPLKLENRLRAQKIEARLSKLMLC 325
G GG RK++D P + LE + + +LSK LC
Sbjct: 130 GRGGPRRRKFQDTVHPLNVTLEELYVGKTSKLKLSKKALC 169
>U67951-5|AAB07574.2| 778|Caenorhabditis elegans Degeneration of
certain neuronsprotein 1 protein.
Length = 778
Score = 26.6 bits (56), Expect = 9.8
Identities = 15/54 (27%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Frame = +2
Query: 263 KLENRLRAQKIEARLSKLMLCGSTLRRVAEVFEKEIEAG---LRQQPSSLQMEN 415
K ++ +K + ++S+ ++ + V E+F KEIE G L++ +LQ +N
Sbjct: 156 KTHSKSEGEKKKPKVSRKQHSDASQQMVRELFAKEIEEGMVELKKSNKTLQSQN 209
>L34414-1|AAA99524.1| 778|Caenorhabditis elegans degenerin protein.
Length = 778
Score = 26.6 bits (56), Expect = 9.8
Identities = 15/54 (27%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Frame = +2
Query: 263 KLENRLRAQKIEARLSKLMLCGSTLRRVAEVFEKEIEAG---LRQQPSSLQMEN 415
K ++ +K + ++S+ ++ + V E+F KEIE G L++ +LQ +N
Sbjct: 156 KTHSKSEGEKKKPKVSRKQHSDASQQMVRELFAKEIEEGMVELKKSNKTLQSQN 209
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,831,279
Number of Sequences: 27780
Number of extensions: 244455
Number of successful extensions: 669
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 646
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 669
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 924715866
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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