Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5106
         (491 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.              23   2.3  
DQ435329-1|ABD92644.1|  150|Apis mellifera OBP12 protein.              22   3.1  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   4.1  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    21   9.4  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    21   9.4  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    21   9.4  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    21   9.4  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    21   9.4  

>U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.
          Length = 182

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = +2

Query: 212 GGADPRKWEDLFLPTPLKLEN 274
           GG    +WED+   TPL   N
Sbjct: 85  GGTSESQWEDVTGSTPLTFVN 105


>DQ435329-1|ABD92644.1|  150|Apis mellifera OBP12 protein.
          Length = 150

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = -3

Query: 87  LNNENRMRGYACFLS 43
           +N E   R Y CFL+
Sbjct: 59  INEEENFRNYGCFLA 73


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -3

Query: 480 PPKSNARNEPSSVPSGNSGT*VFS 409
           PPKS+  +  SS+P  N  T + S
Sbjct: 355 PPKSSESSTGSSIPKLNLSTALMS 378


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +2

Query: 323 CGSTLRRVAEVFEKEIE 373
           CG   +R  E FEKE +
Sbjct: 31  CGGIDKRTIEKFEKEAQ 47


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -3

Query: 384 RSPASISFSNTSATLRSV 331
           RSP S   SNTS T ++V
Sbjct: 83  RSPGSRDRSNTSNTSKTV 100


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = -3

Query: 486 FVPPKSNARNEPSSVPSGNSG 424
           +VP K   R++    P GN G
Sbjct: 132 WVPQKYRLRHKGDGSPGGNGG 152


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +2

Query: 323 CGSTLRRVAEVFEKEIE 373
           CG   +R  E FEKE +
Sbjct: 31  CGGIDKRTIEKFEKEAQ 47


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = -3

Query: 486 FVPPKSNARNEPSSVPSGNSG 424
           +VP K   R++    P GN G
Sbjct: 132 WVPQKYRLRHKGDGSPGGNGG 152


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 141,891
Number of Sequences: 438
Number of extensions: 2834
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13544190
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)