Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5103
         (791 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          23   2.5  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      23   2.5  
AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.          23   2.5  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    23   3.3  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    23   3.3  
AB252421-1|BAE80739.1|  122|Apis mellifera GB15078 protein.            22   5.7  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        21   9.9  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        21   9.9  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        21   9.9  

>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +1

Query: 538 NRYKFTYNV*VPSEKNAKLWGYVFL 612
           N   FTY++ V S+KN K    +FL
Sbjct: 494 NHKPFTYHIVVNSDKNVKGMVRIFL 518


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +1

Query: 538 NRYKFTYNV*VPSEKNAKLWGYVFL 612
           N   FTY++ V S+KN K    +FL
Sbjct: 494 NHKPFTYHIVVNSDKNVKGMVRIFL 518


>AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.
          Length = 226

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +1

Query: 538 NRYKFTYNV*VPSEKNAKLWGYVFL 612
           N   FTY++ V S+KN K    +FL
Sbjct: 120 NHKPFTYHIVVNSDKNVKGMVRIFL 144


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = +2

Query: 551 LLIMSEYLAKKTQNSGGTFFYRQKKVNFLPVPIEGYDVQ 667
           LL++  +L   ++ + G   YR+K+   L   + GYD +
Sbjct: 8   LLVLLTFLLHPSRCTQGKVNYREKEKEVLDNILGGYDAR 46


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = +2

Query: 551 LLIMSEYLAKKTQNSGGTFFYRQKKVNFLPVPIEGYDVQ 667
           LL++  +L   ++ + G   YR+K+   L   + GYD +
Sbjct: 8   LLVLLTFLLHPSRCTQGKVNYREKEKEVLDNILGGYDAR 46


>AB252421-1|BAE80739.1|  122|Apis mellifera GB15078 protein.
          Length = 122

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 9/17 (52%), Positives = 12/17 (70%), Gaps = 1/17 (5%)
 Frame = -3

Query: 639 GKKLTFFCL*KNVP-PE 592
           G+K+TFFC+    P PE
Sbjct: 37  GRKITFFCMATGFPRPE 53


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = +2

Query: 551 LLIMSEYLAKKTQNSGGTFFYRQKKVNFLPVPIEGY 658
           L  + E  A  T  SGG+     K+ N +P+  E Y
Sbjct: 427 LKAIKENNADLTVVSGGSVLRATKEYNTVPIIAESY 462


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = +2

Query: 551 LLIMSEYLAKKTQNSGGTFFYRQKKVNFLPVPIEGY 658
           L  + E  A  T  SGG+     K+ N +P+  E Y
Sbjct: 427 LKAIKENNADLTVVSGGSVLRATKEYNTVPIIAESY 462


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = +2

Query: 551 LLIMSEYLAKKTQNSGGTFFYRQKKVNFLPVPIEGY 658
           L  + E  A  T  SGG+     K+ N +P+  E Y
Sbjct: 427 LKAIKENNADLTVVSGGSVLRATKEYNTVPIIAESY 462


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,805
Number of Sequences: 438
Number of extensions: 3803
Number of successful extensions: 21
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25003662
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)