Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5102
         (714 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1071.12c |stp1|SPAC926.01c|low molecular weight phosphotyros...   130   3e-31
SPAC2F7.04 |pmc2|med1|RNA polymerase II holoenzyme mediator comp...    29   0.87 
SPBC14C8.05c |meu17||glucan-alpha-1,4-glucosidase|Schizosaccharo...    27   2.7  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    27   3.5  
SPCC63.03 |||DNAJ domain protein, DNAJC11 family|Schizosaccharom...    26   4.7  
SPBC83.19c |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   4.7  
SPAC806.06c |||nicotinamide mononucleotide |Schizosaccharomyces ...    26   4.7  
SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyc...    26   6.1  
SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb...    25   8.1  
SPCC1259.10 |pgp1||metallopeptidase Pgp1|Schizosaccharomyces pom...    25   8.1  

>SPAC1071.12c |stp1|SPAC926.01c|low molecular weight phosphotyrosine
           protein phosphatase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 156

 Score =  130 bits (313), Expect = 3e-31
 Identities = 58/118 (49%), Positives = 83/118 (70%), Gaps = 1/118 (0%)
 Frame = +2

Query: 170 KALFICLGNICRSPIAEAVFQKTVNDMNLGEHWD-IDSAAIGGWHVGNPPDWRALDTLKK 346
           + LF+CLGNICRSP+AEAVF+  V    L   +D IDS   G WHVGN PD R L+ LKK
Sbjct: 6   QVLFVCLGNICRSPMAEAVFRNEVEKAGLEARFDTIDSCGTGAWHVGNRPDPRTLEVLKK 65

Query: 347 HNVPYNNHARQITSEDFDYYDYIFGMDESNMKDLNKKAPKGSKAKLLLFGDFDPQGRS 520
           + +   + AR++++ DF  +DYIF MD SN++++N+  P+GS+AK++LFG++   G S
Sbjct: 66  NGIHTKHLARKLSTSDFKNFDYIFAMDSSNLRNINRVKPQGSRAKVMLFGEYASPGVS 123


>SPAC2F7.04 |pmc2|med1|RNA polymerase II holoenzyme mediator complex
           subunit |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 454

 Score = 28.7 bits (61), Expect = 0.87
 Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
 Frame = -3

Query: 559 PLESLS*YGSLMIRSPLRVK-ISK*Q*FRFTPFRSFFVQIFHIGFIHTKDIIIIIEVFRS 383
           P+++ S    L  +S +  K I+K Q  + T F      + H+ F H K I  I+ + R 
Sbjct: 287 PVQNYSHMLGLPSKSTVNYKFINKNQAIQLTGFDVSARSLRHVPFHHPKQIRGILAIVRQ 346

Query: 382 YLSCMVVVWNV 350
           YL   +++ N+
Sbjct: 347 YLLLQLILENI 357


>SPBC14C8.05c
           |meu17||glucan-alpha-1,4-glucosidase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 450

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
 Frame = +2

Query: 206 SPIAEAVFQKTVN--DMNLGEHWDIDSAAIGGW 298
           +P   A++Q+T+   D+ LGE WD     I G+
Sbjct: 235 APDQAALYQRTIEPIDLKLGEFWDPGMGVIKGY 267


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 18/63 (28%), Positives = 32/63 (50%)
 Frame = +2

Query: 53   AQYKIKEYLQN*NTNSLVIDGNQRESSIKLALKMVDHKKKALFICLGNICRSPIAEAVFQ 232
            A  + K +L N   NS++ + +  + ++  A K V   KKA  I L ++ R P+A  +  
Sbjct: 3176 ASLQKKSFLLNEKKNSVMKEVSYAKPAVIEARKSVSDIKKAHLIELRSLSRPPMAIRITM 3235

Query: 233  KTV 241
            + V
Sbjct: 3236 EVV 3238


>SPCC63.03 |||DNAJ domain protein, DNAJC11
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 642

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
 Frame = -1

Query: 324 LQSGGLPTCQPPIAALSISQCSPRFMSFTVFWKTAS-AIGDRHIL-PRQINNAFFL 163
           +Q  GL   +PP A + I +   RF + T  WKT   ++G   I  PR  N++F L
Sbjct: 276 IQISGLK--RPPQATVVIGRQITRFGTLTARWKTGVWSLGSWGIASPRGANSSFSL 329


>SPBC83.19c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 119

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = -2

Query: 551 ITIIVW-ISYDSIALEGQNLQITVVSLYSL*ELFCSNLSYWIHPYQRYNHN 402
           I I  W  +++SI +   NLQ   +  Y    LF S+ SY  HP  R++++
Sbjct: 16  IKIFTWKANFESIRI---NLQHMHLYHYEHIHLFTSSQSYMYHPNARFSYS 63


>SPAC806.06c |||nicotinamide mononucleotide |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 365

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -1

Query: 621 NMLPKNPLEHRNRTARNIFQ 562
           N  PKNPL  RN ++ N+ Q
Sbjct: 8   NSFPKNPLLSRNSSSSNVIQ 27


>SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1050

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 16/57 (28%), Positives = 26/57 (45%)
 Frame = -1

Query: 321  QSGGLPTCQPPIAALSISQCSPRFMSFTVFWKTASAIGDRHILPRQINNAFFLWSTI 151
            +S       PP++     +  P   S   F +T S+ G+R + P+Q N   +  STI
Sbjct: 885  RSASFDKSAPPLSVPLSFRLGPHMHSVKSF-ETESSFGNRSLSPKQENRRTYSDSTI 940


>SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1254

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -1

Query: 348  CFFKVSSALQSGGLPTCQPPI 286
            CFF +S A  + G P C+P I
Sbjct: 959  CFFSLSQAAAALGEPYCRPEI 979


>SPCC1259.10 |pgp1||metallopeptidase Pgp1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 412

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 13/46 (28%), Positives = 22/46 (47%)
 Frame = +2

Query: 140 LALKMVDHKKKALFICLGNICRSPIAEAVFQKTVNDMNLGEHWDID 277
           LALK +D  K    +C G + R+ + + +   T+  +   EH   D
Sbjct: 307 LALKRLDLSKVKYLVCSGGVARNELLKKMLNDTLMVLQF-EHQPTD 351


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,228,182
Number of Sequences: 5004
Number of extensions: 72606
Number of successful extensions: 163
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)