Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5100
         (348 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC354.12 |gpd3||glyceraldehyde 3-phosphate dehydrogenase Gpd3|...    25   4.4  
SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit ...    24   5.9  
SPAC823.09c |||L-asparaginase |Schizosaccharomyces pombe|chr 1||...    24   7.8  
SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr 1||...    24   7.8  

>SPBC354.12 |gpd3||glyceraldehyde 3-phosphate dehydrogenase
           Gpd3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 335

 Score = 24.6 bits (51), Expect = 4.4
 Identities = 10/31 (32%), Positives = 20/31 (64%)
 Frame = +2

Query: 188 LKVDGDIYAVDVYGLR*PLNTRWAESSSTHL 280
           L +DG  +++DV+  R P N +W+ S + ++
Sbjct: 67  LVIDG--HSIDVHNERDPANIKWSASGAEYV 95


>SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit
           Cct7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 558

 Score = 24.2 bits (50), Expect = 5.9
 Identities = 8/13 (61%), Positives = 12/13 (92%)
 Frame = -1

Query: 270 DELSAHLVLRGYR 232
           D +S+HL++RGYR
Sbjct: 118 DGVSSHLIIRGYR 130


>SPAC823.09c |||L-asparaginase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 285

 Score = 23.8 bits (49), Expect = 7.8
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +3

Query: 30  SNAEIYLLVVRPLVSPHG*APPPCL 104
           S A +Y+L  R ++S HG  PP  L
Sbjct: 102 SEACLYILNKRKVMSQHGLVPPAML 126


>SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1101

 Score = 23.8 bits (49), Expect = 7.8
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -3

Query: 175 KSRYSYNGCPNPSNRNALLLHDRNRQGGGAYPC 77
           KSR S+ G P   ++ +L L+    QGG +  C
Sbjct: 725 KSRLSFGGRPGSPSKISLSLNRFYNQGGLSKSC 757


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,423,822
Number of Sequences: 5004
Number of extensions: 25960
Number of successful extensions: 56
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 104153322
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)