Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5100
         (348 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0572 + 17310729-17310746,17312209-17312902,17312991-173134...    27   5.3  
12_02_1193 + 26891619-26892456,26892545-26893884                       26   7.1  
04_04_1670 - 35227581-35228168,35228250-35228435,35228529-35228801     26   7.1  
09_02_0548 - 10467342-10468810,10470309-10471632                       26   9.3  

>04_03_0572 +
           17310729-17310746,17312209-17312902,17312991-17313400,
           17325755-17326063
          Length = 476

 Score = 26.6 bits (56), Expect = 5.3
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = -3

Query: 271 GRAFGPSGVKGLPEPIDIYSVNVAIYFE 188
           G+AF P G   +P+PID  +V  A++FE
Sbjct: 7   GQAFAP-GKAVVPKPIDNRTVVFAVFFE 33


>12_02_1193 + 26891619-26892456,26892545-26893884
          Length = 725

 Score = 26.2 bits (55), Expect = 7.1
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = -3

Query: 271 GRAFGPSGVKGLPEPIDIYSVNVAIYFE 188
           G+AF P G   +P+P+D  +V  A++FE
Sbjct: 49  GQAFAP-GKTVVPKPVDNRTVVFAVFFE 75


>04_04_1670 - 35227581-35228168,35228250-35228435,35228529-35228801
          Length = 348

 Score = 26.2 bits (55), Expect = 7.1
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -1

Query: 162 VTTAAPTLQTETHYCFTTEIDRVVVPTRADSQEVLPP 52
           +  AA  L+   H CF    D  ++ T A+S++ LPP
Sbjct: 74  IALAAGLLRIFFHDCFPQGCDASLLLTGANSEQQLPP 110


>09_02_0548 - 10467342-10468810,10470309-10471632
          Length = 930

 Score = 25.8 bits (54), Expect = 9.3
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -3

Query: 115 HDRNRQGGGAYPCGL 71
           H+RN+  G AYPC L
Sbjct: 896 HERNKYAGVAYPCEL 910


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,252,563
Number of Sequences: 37544
Number of extensions: 200167
Number of successful extensions: 429
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 423
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 429
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 506210712
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)