Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5100
         (348 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    23   1.0  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       21   5.5  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    20   7.3  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    20   7.3  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    20   7.3  

>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 23.0 bits (47), Expect = 1.0
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +3

Query: 90  PPPCLFLS*SSNAFRFEGLGQPL*LYRDFRTYI 188
           P  CLF    + A +FE L +PL ++    TYI
Sbjct: 602 PRYCLFGHNVTLANKFESLSEPLRIHVSPTTYI 634


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 20.6 bits (41), Expect = 5.5
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = -3

Query: 157 NGCPNPSNRNALLLHDRNR 101
           N C NP    A  + DRN+
Sbjct: 308 NSCMNPIVYGAFNIRDRNK 326


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 20.2 bits (40), Expect = 7.3
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = -2

Query: 293 FFYCLDGWTSFR 258
           F YCL G  SFR
Sbjct: 429 FLYCLAGDESFR 440


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 20.2 bits (40), Expect = 7.3
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -3

Query: 139  SNRNALLLHDRNRQGGGAYPCGLT 68
            S  +++LLH ++   GGA   G T
Sbjct: 1415 STSSSILLHWKSGHNGGASLTGYT 1438


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 20.2 bits (40), Expect = 7.3
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -3

Query: 139  SNRNALLLHDRNRQGGGAYPCGLT 68
            S  +++LLH ++   GGA   G T
Sbjct: 1411 STSSSILLHWKSGHNGGASLTGYT 1434


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 102,151
Number of Sequences: 438
Number of extensions: 1817
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  7936320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)