Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5094
         (360 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82272-8|CAB05223.1|  337|Caenorhabditis elegans Hypothetical pr...    27   3.9  
Z82260-13|CAB05143.1|  337|Caenorhabditis elegans Hypothetical p...    27   3.9  
Z69718-5|CAA93539.1|  236|Caenorhabditis elegans Hypothetical pr...    27   5.2  
Z69716-8|CAA93530.1|  236|Caenorhabditis elegans Hypothetical pr...    27   5.2  
L23110-1|AAA03544.1|  744|Caenorhabditis elegans BMP receptor pr...    27   5.2  
AF047651-12|AAN63460.1|  592|Caenorhabditis elegans Abnormal dau...    27   5.2  
AF047651-11|AAO61443.1|  446|Caenorhabditis elegans Abnormal dau...    27   5.2  
AF047651-10|AAC02726.1|  744|Caenorhabditis elegans Abnormal dau...    27   5.2  
U41545-4|AAK39134.1|  665|Caenorhabditis elegans Temporarily ass...    26   6.9  

>Z82272-8|CAB05223.1|  337|Caenorhabditis elegans Hypothetical
           protein F55G11.1 protein.
          Length = 337

 Score = 27.1 bits (57), Expect = 3.9
 Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = +1

Query: 154 LKYGKIELTI-CMLLHYAVEQQHLFAGFYFCSPFT 255
           L  GKI+ +I CML  Y     H F  + + SPFT
Sbjct: 249 LTTGKIKRSIICMLAVYFTFLVHAFCFYVYISPFT 283


>Z82260-13|CAB05143.1|  337|Caenorhabditis elegans Hypothetical
           protein F55G11.1 protein.
          Length = 337

 Score = 27.1 bits (57), Expect = 3.9
 Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = +1

Query: 154 LKYGKIELTI-CMLLHYAVEQQHLFAGFYFCSPFT 255
           L  GKI+ +I CML  Y     H F  + + SPFT
Sbjct: 249 LTTGKIKRSIICMLAVYFTFLVHAFCFYVYISPFT 283


>Z69718-5|CAA93539.1|  236|Caenorhabditis elegans Hypothetical
           protein W06D11.1 protein.
          Length = 236

 Score = 26.6 bits (56), Expect = 5.2
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +1

Query: 175 LTICMLLHYAVEQQHLFAGFY 237
           L  C L+H   E+QH+FA  Y
Sbjct: 150 LNNCHLMHLTAEKQHIFARVY 170


>Z69716-8|CAA93530.1|  236|Caenorhabditis elegans Hypothetical
           protein W06D11.1 protein.
          Length = 236

 Score = 26.6 bits (56), Expect = 5.2
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +1

Query: 175 LTICMLLHYAVEQQHLFAGFY 237
           L  C L+H   E+QH+FA  Y
Sbjct: 150 LNNCHLMHLTAEKQHIFARVY 170


>L23110-1|AAA03544.1|  744|Caenorhabditis elegans BMP receptor
           protein.
          Length = 744

 Score = 26.6 bits (56), Expect = 5.2
 Identities = 17/44 (38%), Positives = 20/44 (45%), Gaps = 3/44 (6%)
 Frame = -2

Query: 218 CCCSTA*CKS---IQIVNSILPYFSVKK*LLWXXXXXXFMIESL 96
           CCCST  C     I++VN  L   S    LLW        +ESL
Sbjct: 182 CCCSTNNCNMPDLIEMVNPSLKKDSDNSALLWASTPSNMDLESL 225


>AF047651-12|AAN63460.1|  592|Caenorhabditis elegans Abnormal dauer
           formation protein4, isoform c protein.
          Length = 592

 Score = 26.6 bits (56), Expect = 5.2
 Identities = 17/44 (38%), Positives = 20/44 (45%), Gaps = 3/44 (6%)
 Frame = -2

Query: 218 CCCSTA*CKS---IQIVNSILPYFSVKK*LLWXXXXXXFMIESL 96
           CCCST  C     I++VN  L   S    LLW        +ESL
Sbjct: 30  CCCSTNNCNMPDLIEMVNPSLKKDSDNSALLWASTPSNMDLESL 73


>AF047651-11|AAO61443.1|  446|Caenorhabditis elegans Abnormal dauer
           formation protein4, isoform d protein.
          Length = 446

 Score = 26.6 bits (56), Expect = 5.2
 Identities = 17/44 (38%), Positives = 20/44 (45%), Gaps = 3/44 (6%)
 Frame = -2

Query: 218 CCCSTA*CKS---IQIVNSILPYFSVKK*LLWXXXXXXFMIESL 96
           CCCST  C     I++VN  L   S    LLW        +ESL
Sbjct: 182 CCCSTNNCNMPDLIEMVNPSLKKDSDNSALLWASTPSNMDLESL 225


>AF047651-10|AAC02726.1|  744|Caenorhabditis elegans Abnormal dauer
           formation protein4, isoform a protein.
          Length = 744

 Score = 26.6 bits (56), Expect = 5.2
 Identities = 17/44 (38%), Positives = 20/44 (45%), Gaps = 3/44 (6%)
 Frame = -2

Query: 218 CCCSTA*CKS---IQIVNSILPYFSVKK*LLWXXXXXXFMIESL 96
           CCCST  C     I++VN  L   S    LLW        +ESL
Sbjct: 182 CCCSTNNCNMPDLIEMVNPSLKKDSDNSALLWASTPSNMDLESL 225


>U41545-4|AAK39134.1|  665|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 52 protein.
          Length = 665

 Score = 26.2 bits (55), Expect = 6.9
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +1

Query: 283 RKYTWKNDYEFTRGGARYPIRPIVS 357
           R Y W +D EF     + PIR + S
Sbjct: 543 RDYVWTDDEEFVSDDKKIPIRRVAS 567


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,408,228
Number of Sequences: 27780
Number of extensions: 153465
Number of successful extensions: 373
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 366
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 373
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 492763868
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)