Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5092
(595 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_1044 + 8231933-8231941,8232091-8232166,8232423-8232871 35 0.056
04_03_0805 - 19850355-19850817,19851146-19851227,19852403-19852412 34 0.098
08_02_0572 - 18842539-18842950,18843242-18843613,18844947-18845671 31 0.52
01_01_0409 - 3084821-3084988,3085069-3085155,3085270-3085476,308... 31 0.52
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 31 0.92
03_03_0106 - 14500935-14501263,14501357-14501432,14501531-14501542 30 1.6
03_02_0123 + 5745390-5745576,5745993-5746082,5746255-5746351,574... 29 2.1
06_03_1282 - 28946363-28946533,28947234-28947272,28947399-289475... 29 3.7
10_02_0158 + 6011852-6012049,6012085-6012543 28 4.9
04_03_0800 - 19820886-19821421,19822476-19822563,19822871-19822888 28 4.9
05_03_0342 - 12704683-12704736,12704827-12704895,12704969-12706003 28 6.5
02_04_0413 + 22681957-22682035,22682253-22682788 28 6.5
01_06_0146 + 26969011-26969995,26970878-26970930 27 8.5
01_05_0624 + 23772613-23774671,23774737-23775596 27 8.5
>01_01_1044 + 8231933-8231941,8232091-8232166,8232423-8232871
Length = 177
Score = 34.7 bits (76), Expect = 0.056
Identities = 21/50 (42%), Positives = 22/50 (44%), Gaps = 8/50 (16%)
Frame = +2
Query: 197 PRCQARCCYPCSLP------RGPCSVPGCPSC-LP-RRPCSVPGRPSCLP 322
P C C PCS P RG C P P C LP PC +P P C P
Sbjct: 107 PGCPCSCSTPCSFPPIGCHDRGICPPPCPPPCPLPCPPPCPLPCPPPCPP 156
Score = 28.3 bits (60), Expect = 4.9
Identities = 13/28 (46%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
Frame = +2
Query: 203 CQARCCYPCSLP-RGPCSVPGCPSCLPR 283
C C PC LP PC +P P C PR
Sbjct: 130 CPPPCPPPCPLPCPPPCPLPCPPPCPPR 157
>04_03_0805 - 19850355-19850817,19851146-19851227,19852403-19852412
Length = 184
Score = 33.9 bits (74), Expect = 0.098
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Frame = +2
Query: 221 YPCSLPRGPCSVPGCPSCLPR--RPCSVPGRPSC-LPHFSTP 337
YP P G C+ P C C P+ P P +P+C P +S+P
Sbjct: 113 YPPPPPCGGCATPHCCDCHPKPPPPAPAPAKPACGCPAWSSP 154
>08_02_0572 - 18842539-18842950,18843242-18843613,18844947-18845671
Length = 502
Score = 31.5 bits (68), Expect = 0.52
Identities = 24/72 (33%), Positives = 26/72 (36%), Gaps = 5/72 (6%)
Frame = +2
Query: 98 RGVESWTPGCSRALLSR*SRFFPKHCAP*PASA-----PRCQARCCYPCSLPRGPCSVPG 262
RG W P C F HCA PRC AR P + RG +V
Sbjct: 100 RGGGGWRPACDACGDLLRGDGFAYHCADGHGLVGLNLHPRC-ARLRLPVAAARGAAAVKL 158
Query: 263 CPSCLPRRPCSV 298
C PRR C V
Sbjct: 159 CRRAAPRRRCGV 170
>01_01_0409 -
3084821-3084988,3085069-3085155,3085270-3085476,
3085904-3085985,3086085-3086275,3086410-3086616,
3086709-3086871,3087905-3087960,3088035-3088148,
3088599-3089807
Length = 827
Score = 31.5 bits (68), Expect = 0.52
Identities = 30/89 (33%), Positives = 36/89 (40%), Gaps = 4/89 (4%)
Frame = +2
Query: 38 NHICTNVQHVLQNRSTVRFGRGVESWTPGCSRALLSR*S-RFFPKHCAP*PASAPRC-QA 211
NH CT HVLQ S G A+LS S F + C R +
Sbjct: 537 NHYCTKACHVLQIPL---------SQPEGDQSAILSLASASAFAEPCEECNLPCQRVREP 587
Query: 212 RCCYPCSLPRGPCSVPGCPSC--LPRRPC 292
C +PC L PC + CP C L +RPC
Sbjct: 588 PCSHPCPL---PCHLNDCPPCKALVKRPC 613
>10_01_0100 +
1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 30.7 bits (66), Expect = 0.92
Identities = 21/60 (35%), Positives = 24/60 (40%)
Frame = +2
Query: 158 FFPKHCAP*PASAPRCQARCCYPCSLPRGPCSVPGCPSCLPRRPCSVPGRPSCLPHFSTP 337
F P P P P Q+ Y S P P P P+CL P P P LP+ S P
Sbjct: 561 FSPPPPPPPPPPPPLPQSN--YASSQPPPPPPPPPLPNCLVPSPPPPPPPPPILPNRSVP 618
>03_03_0106 - 14500935-14501263,14501357-14501432,14501531-14501542
Length = 138
Score = 29.9 bits (64), Expect = 1.6
Identities = 14/28 (50%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Frame = +2
Query: 224 PCSLPRGPCSVPGCPSCLPRRPC-SVPG 304
PC P PC PGC SC P C + PG
Sbjct: 94 PCPPPPPPCC-PGCNSCRPACQCAAAPG 120
>03_02_0123 +
5745390-5745576,5745993-5746082,5746255-5746351,
5746446-5746584
Length = 170
Score = 29.5 bits (63), Expect = 2.1
Identities = 22/73 (30%), Positives = 28/73 (38%)
Frame = +2
Query: 185 PASAPRCQARCCYPCSLPRGPCSVPGCPSCLPRRPCSVPGRPSCLPHFSTPLLLG*ICLV 364
P +APRC+ RC + P G LP L +S+P+ G I
Sbjct: 12 PVTAPRCRGRCSAATAATSAPEKTAGHVGRLPLAIVPAAAASLSLVLWSSPVHAG-IMSG 70
Query: 365 PKHRPS*PAPDYP 403
K S P PD P
Sbjct: 71 FKGMESVPGPDLP 83
>06_03_1282 -
28946363-28946533,28947234-28947272,28947399-28947566,
28947605-28947697,28948135-28948215,28948409-28948499,
28948657-28948728,28948803-28948903,28949283-28949381,
28949631-28949954
Length = 412
Score = 28.7 bits (61), Expect = 3.7
Identities = 17/41 (41%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = +3
Query: 75 IVVLCALV-AVSKAGLLAAPVHYSPAEAVSSQSIVRHDQPQ 194
IV+L A V AV L P HY+P VSS S P+
Sbjct: 15 IVILIAFVCAVGIGAYLYTPQHYTPCYLVSSNSCSSRPPPE 55
>10_02_0158 + 6011852-6012049,6012085-6012543
Length = 218
Score = 28.3 bits (60), Expect = 4.9
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +2
Query: 278 PRRP-CSVPGRPSCLPHFSTPLLLG*ICLVPKHRP 379
P+RP C +P RP C STP+ G + L+P P
Sbjct: 179 PKRPLCPLPKRPLCFVEASTPVGHGKV-LIPSLSP 212
>04_03_0800 - 19820886-19821421,19822476-19822563,19822871-19822888
Length = 213
Score = 28.3 bits (60), Expect = 4.9
Identities = 16/50 (32%), Positives = 19/50 (38%), Gaps = 1/50 (2%)
Frame = +2
Query: 170 HCAP*PASAPRCQARC-CYPCSLPRGPCSVPGCPSCLPRRPCSVPGRPSC 316
HC P P P C C C G C+ P P C CS+ +C
Sbjct: 120 HCCPEPPPPPPKPKPCECTYCGGHGGGCNKPAVPPC--AGGCSISDGGAC 167
>05_03_0342 - 12704683-12704736,12704827-12704895,12704969-12706003
Length = 385
Score = 27.9 bits (59), Expect = 6.5
Identities = 13/36 (36%), Positives = 16/36 (44%)
Frame = +2
Query: 233 LPRGPCSVPGCPSCLPRRPCSVPGRPSCLPHFSTPL 340
+PR PC P P P P ++ P STPL
Sbjct: 35 IPRRPCPPPVRPPDTPAMPPALTSNPPSFRPLSTPL 70
>02_04_0413 + 22681957-22682035,22682253-22682788
Length = 204
Score = 27.9 bits (59), Expect = 6.5
Identities = 17/50 (34%), Positives = 19/50 (38%), Gaps = 7/50 (14%)
Frame = +2
Query: 173 CAP*PASA---PRCQARCCYPCSLPRGPCSVPGCP----SCLPRRPCSVP 301
C P P+ P C+ CC C G C P P C P PC P
Sbjct: 129 CPPSPSCENHHPPCKPGCCC-CGCSGGECPPPPSPPCQHECPPTPPCEHP 177
>01_06_0146 + 26969011-26969995,26970878-26970930
Length = 345
Score = 27.5 bits (58), Expect = 8.5
Identities = 20/46 (43%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
Frame = +2
Query: 176 AP*PASAPRCQARCCYPCSLPRGPCSVPGCP-SCLPRRPCSVPGRP 310
AP PA AP A P SLP P PG P S L R G P
Sbjct: 102 APPPAPAPDQPAPPSPPPSLPPSP-PAPGSPESMLEREASEADGEP 146
>01_05_0624 + 23772613-23774671,23774737-23775596
Length = 972
Score = 27.5 bits (58), Expect = 8.5
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = -3
Query: 182 MAHNALGRNGFSGRVVHGSSQESSFRHRDQSAQYYD 75
+ H L R GF GRV H S+ + D +++ YD
Sbjct: 159 LTHLNLARMGFYGRVPHQLGNLSNLQFLDITSEIYD 194
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,497,435
Number of Sequences: 37544
Number of extensions: 232312
Number of successful extensions: 899
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 818
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 896
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1411925004
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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