Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5091
         (454 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0282 - 2088302-2089081                                           29   1.3  
11_01_0273 - 2048527-2049297                                           28   4.0  
07_03_1652 - 28409097-28409165,28409788-28409911,28410317-284105...    27   5.3  
03_03_0039 - 13986844-13986907,13987219-13987273,13987492-139876...    27   5.3  

>12_01_0282 - 2088302-2089081
          Length = 259

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 15/41 (36%), Positives = 28/41 (68%), Gaps = 3/41 (7%)
 Frame = +2

Query: 248 HSSSLP---AFAIPVSNEIIQKIEYDPLYQQELIINPKKDP 361
           H++SLP   +FA+PVS  +   ++ D +++ EL++  KK+P
Sbjct: 143 HAASLPFLSSFAVPVSLPVDCGVDGDSMFEGELVV--KKEP 181


>11_01_0273 - 2048527-2049297
          Length = 256

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 14/41 (34%), Positives = 28/41 (68%), Gaps = 3/41 (7%)
 Frame = +2

Query: 248 HSSSLP---AFAIPVSNEIIQKIEYDPLYQQELIINPKKDP 361
           H++SLP   +FA+PVS  +   ++ D +++ +L++  KK+P
Sbjct: 142 HAASLPFLSSFAVPVSLPVDCGVDGDSMFEGKLVV--KKEP 180


>07_03_1652 -
           28409097-28409165,28409788-28409911,28410317-28410557,
           28410641-28411375,28411464-28411667,28411741-28412422,
           28412517-28412773,28412849-28413543,28414003-28414250
          Length = 1084

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 11/42 (26%), Positives = 22/42 (52%)
 Frame = +2

Query: 209 NFLNPFFAFIRTSHSSSLPAFAIPVSNEIIQKIEYDPLYQQE 334
           NF+ P ++F+R +     P  +  +    + K+EYD L+  +
Sbjct: 560 NFVQPMYSFLRFADEDKNPNLSEVLLRYQLLKMEYDSLFANQ 601


>03_03_0039 -
           13986844-13986907,13987219-13987273,13987492-13987606,
           13987652-13987774,13987962-13988015,13988352-13988411,
           13988522-13988584,13988790-13988863,13989177-13989261,
           13989376-13989456,13989764-13989856,13990275-13990339,
           13990407-13990482,13990570-13990635,13991094-13991153,
           13991233-13991322,13991755-13991817,13992502-13992625,
           13993031-13993271,13993355-13993624,13993715-13994089,
           13994178-13994381,13994455-13995136,13995231-13995279,
           13995362-13995488,13995564-13996258,13996718-13996965
          Length = 1433

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 11/42 (26%), Positives = 22/42 (52%)
 Frame = +2

Query: 209 NFLNPFFAFIRTSHSSSLPAFAIPVSNEIIQKIEYDPLYQQE 334
           NF+ P ++F+R +     P  +  +    + K+EYD L+  +
Sbjct: 533 NFVQPMYSFLRFADEDKNPNLSEVLLRYQLLKMEYDSLFANQ 574


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,914,626
Number of Sequences: 37544
Number of extensions: 225753
Number of successful extensions: 565
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 558
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 565
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 883560296
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)