Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5091
         (454 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L11247-1|AAA28010.2|  484|Caenorhabditis elegans Hypothetical pr...    29   2.1  
AF043697-4|AAO38636.1|  431|Caenorhabditis elegans Hypothetical ...    28   2.8  
AF043697-3|AAB97558.1|  548|Caenorhabditis elegans Hypothetical ...    28   2.8  
AF040646-2|AAK31538.1|  275|Caenorhabditis elegans Hypothetical ...    28   2.8  
AC024770-8|AAF59486.1|  740|Caenorhabditis elegans Hypothetical ...    28   3.7  
Z82059-5|CAB04879.2|  408|Caenorhabditis elegans Hypothetical pr...    27   6.4  
Z81111-2|CAB03266.1|  535|Caenorhabditis elegans Hypothetical pr...    27   8.4  

>L11247-1|AAA28010.2|  484|Caenorhabditis elegans Hypothetical
           protein F09G8.5 protein.
          Length = 484

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 15/46 (32%), Positives = 25/46 (54%)
 Frame = -2

Query: 192 LVSVKSQVT*IWISIRLHQIAIFIVKQKSFLYFHQFVMNNLRKSSI 55
           LVS+  Q   + + + LH  + F++   SFL+F  F  NN +  S+
Sbjct: 14  LVSIAFQS--VLLPLILHLFSFFLLSFLSFLHFRSFSANNFKHHSL 57


>AF043697-4|AAO38636.1|  431|Caenorhabditis elegans Hypothetical
           protein F56C11.6b protein.
          Length = 431

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 11/24 (45%), Positives = 18/24 (75%)
 Frame = +2

Query: 284 SNEIIQKIEYDPLYQQELIINPKK 355
           S +++Q I+  PLY+ E+ INPK+
Sbjct: 150 SEDLLQFIDQQPLYKIEMGINPKR 173


>AF043697-3|AAB97558.1|  548|Caenorhabditis elegans Hypothetical
           protein F56C11.6a protein.
          Length = 548

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 11/24 (45%), Positives = 18/24 (75%)
 Frame = +2

Query: 284 SNEIIQKIEYDPLYQQELIINPKK 355
           S +++Q I+  PLY+ E+ INPK+
Sbjct: 267 SEDLLQFIDQQPLYKIEMGINPKR 290


>AF040646-2|AAK31538.1|  275|Caenorhabditis elegans Hypothetical
           protein H17B01.3 protein.
          Length = 275

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 19/56 (33%), Positives = 26/56 (46%)
 Frame = +2

Query: 107 DFCFTMKMAIW*RRILIHIYVTWLFTLTRLPLYGNFLNPFFAFIRTSHSSSLPAFA 274
           DF FT+ M     R+L+H  V W F  T       F + F A+   SH + + A A
Sbjct: 27  DFDFTLGM-----RVLVHSLVLWAFVATS---SAYFSDSFMAYFDYSHQNLVHALA 74


>AC024770-8|AAF59486.1|  740|Caenorhabditis elegans Hypothetical
           protein Y39H10A.2 protein.
          Length = 740

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
 Frame = +2

Query: 224 FFAFIRTSHSSSLPAFAIP-VSNEIIQKIEYDPLYQQELIINPKKDPAIVSNPVCEGKRA 400
           FF F+ T     +PAF  P V ++  Q   +  L   + I+ PK     +S  +    + 
Sbjct: 405 FFTFVFTRSMVDMPAFMTPAVVDDTCQNSYWVNLLYIQNIVGPKDICYFISWYLATDLQI 464

Query: 401 QVQSPLTCNSF 433
            + SPL   SF
Sbjct: 465 YIMSPLILLSF 475


>Z82059-5|CAB04879.2|  408|Caenorhabditis elegans Hypothetical
           protein T27E9.9 protein.
          Length = 408

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
 Frame = +2

Query: 161 IYVTWLFTLTRLP-LYGNFLNPFFAFIRTSHSSSLPAFAIPVSNEIIQKIEYDPLY 325
           + + W+ T+  +  L GN   P +  +  S SS L  +   + NE+I    +  LY
Sbjct: 206 VKMEWITTVPPITILKGNITLPDYVLVDFSSSSELRLYPPGIFNELIATFTFQRLY 261


>Z81111-2|CAB03266.1|  535|Caenorhabditis elegans Hypothetical
           protein T01G5.2 protein.
          Length = 535

 Score = 26.6 bits (56), Expect = 8.4
 Identities = 23/87 (26%), Positives = 40/87 (45%), Gaps = 1/87 (1%)
 Frame = +2

Query: 116 FTMKMAIW*RRILIHIYVTWLFTLTRLPLYGNFLNPFFAFIRTSHSSSLPAFAIPVSNEI 295
           F  +M I+ RR+L H    W        ++    NPFF F R     ++P   I V+  +
Sbjct: 226 FDGEMEIY-RRLLGHNLTNWRHLFPSASIFFVNSNPFFDFPRPVLEKTVPIGGISVNMGV 284

Query: 296 IQKIEYDPLYQQ-ELIINPKKDPAIVS 373
            ++   D L ++ E ++N +    +VS
Sbjct: 285 RKE---DMLTEEWEKVLNQRPHTMLVS 308


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,312,836
Number of Sequences: 27780
Number of extensions: 206162
Number of successful extensions: 603
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 560
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 603
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 799252350
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)