Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5088
         (461 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1786.02 |||phospholipase |Schizosaccharomyces pombe|chr 1|||...    27   1.8  
SPCC622.04 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual         25   4.3  
SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces pombe...    25   4.3  
SPAC343.01c |erg8||phosphomevalonate kinase |Schizosaccharomyces...    25   7.4  
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ...    25   7.4  
SPCC132.01c ||SPCC1322.17c|DUF814 family protein|Schizosaccharom...    24   9.8  
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo...    24   9.8  

>SPAC1786.02 |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 644

 Score = 26.6 bits (56), Expect = 1.8
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -1

Query: 146 TTRKPTPILTHESPPITLFRQPIPWARK 63
           TTR   P+  H +PP+ ++    PW  K
Sbjct: 502 TTRGDVPV-DHNTPPLVVYMPNTPWTMK 528


>SPCC622.04 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 140

 Score = 25.4 bits (53), Expect = 4.3
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -3

Query: 207 LIRIYYELTVRLLLSGSHSFHYAKANAHLNP*ITPDY 97
           L+ +Y+ LT+ +LL     FHY   N+   P   PDY
Sbjct: 60  LLFVYFFLTLIILLVSFMGFHY--LNSIPKPEAEPDY 94


>SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 310

 Score = 25.4 bits (53), Expect = 4.3
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = -2

Query: 436 GGRAHSPPGV*WLLEPTDIYN 374
           GG  H P  V WLL P DIY+
Sbjct: 235 GGPLHDPNTVMWLLRP-DIYS 254


>SPAC343.01c |erg8||phosphomevalonate kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 426

 Score = 24.6 bits (51), Expect = 7.4
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -2

Query: 298 PERITASWLK*AGWWYLPVRTHK 230
           P+ I A WL    W   P+R H+
Sbjct: 54  PQFINAEWLYNIDWTVSPIRVHQ 76


>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
            Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1955

 Score = 24.6 bits (51), Expect = 7.4
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -3

Query: 207  LIRIYYELTVRLLLSGSHSFHYAKANAHLN 118
            L R YY L  +L L    SF++A    HLN
Sbjct: 1331 LSREYYYLGTQLQLDRFLSFYFAHPGFHLN 1360


>SPCC132.01c ||SPCC1322.17c|DUF814 family
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1021

 Score = 24.2 bits (50), Expect = 9.8
 Identities = 17/59 (28%), Positives = 24/59 (40%)
 Frame = -2

Query: 373 VNPPSALRYEF*GLSIVTTAAPPFKPERITASWLK*AGWWYLPVRTHKRSCHQFISYTD 197
           VN P    Y F     +T AA P  PE  T  +     +  L +    R C +F +Y +
Sbjct: 281 VNKPPVKGYIFSLEQALTNAADPQHPEECTTLYEDFHPFQPLQLVQANRKCMEFPTYNE 339


>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
            Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1826

 Score = 24.2 bits (50), Expect = 9.8
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -3

Query: 207  LIRIYYELTVRLLLSGSHSFHYAKANAHLN 118
            L R Y+ L  +L      SF+YA A  HLN
Sbjct: 1241 LSREYFYLGTQLPFFRMLSFYYAHAGFHLN 1270


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,137,695
Number of Sequences: 5004
Number of extensions: 44344
Number of successful extensions: 81
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 174340060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)