Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5088
(461 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M17214-2|AAA28508.1| 858|Drosophila melanogaster protein ( D.me... 38 0.007
AF237761-2|AAF81411.1| 908|Drosophila melanogaster unknown prot... 38 0.009
X17551-2|CAA35587.1| 888|Drosophila melanogaster protein ( D.me... 36 0.027
AY047531-1|AAK77263.1| 888|Drosophila melanogaster GH03753p pro... 36 0.027
AY180919-1|AAN87272.1| 884|Drosophila melanogaster ORF1 protein. 35 0.061
AY060438-1|AAL25477.1| 906|Drosophila melanogaster LD46618p pro... 35 0.061
AF456125-1|AAL57609.1| 832|Drosophila melanogaster reverse tran... 35 0.061
X51968-2|CAA36227.1| 1021|Drosophila melanogaster protein ( Dros... 31 0.57
M22874-2|AAA28675.1| 916|Drosophila melanogaster protein ( D.me... 31 1.00
AY089343-1|AAL90081.2| 718|Drosophila melanogaster AT16518p pro... 31 1.00
AY600955-2|AAT12845.1| 1092|Drosophila melanogaster pol protein ... 29 4.0
AE014297-4736|AAF57144.1| 526|Drosophila melanogaster CG11340-P... 29 4.0
U02279-1|AAA18301.1| 964|Drosophila melanogaster protein ( Dros... 28 5.3
AY561850-2|AAS68534.1| 1080|Drosophila melanogaster pol protein ... 28 5.3
AY035777-2|AAK77971.1| 1080|Drosophila melanogaster pol protein ... 28 5.3
AM040245-1|CAJ13341.1| 1042|Drosophila melanogaster pol protein ... 28 5.3
AJ566116-2|CAD92793.1| 1080|Drosophila melanogaster pol protein ... 28 5.3
>M17214-2|AAA28508.1| 858|Drosophila melanogaster protein (
D.melanogaster Fw repetitiveelement putative reverse
transcriptase, complete cds,and putative binding
protein, 3' end. ).
Length = 858
Score = 37.9 bits (84), Expect = 0.007
Identities = 17/37 (45%), Positives = 25/37 (67%)
Frame = -1
Query: 113 ESPPITLFRQPIPWARKVKYLGVTLDASMTFRPHIKS 3
+ PP+ L P+P A +V YLGV LD +T+R HI++
Sbjct: 721 DCPPLLLNSIPLPKADEVTYLGVHLDRRLTWRRHIEA 757
>AF237761-2|AAF81411.1| 908|Drosophila melanogaster unknown
protein.
Length = 908
Score = 37.5 bits (83), Expect = 0.009
Identities = 18/47 (38%), Positives = 25/47 (53%)
Frame = -1
Query: 149 FTTRKPTPILTHESPPITLFRQPIPWARKVKYLGVTLDASMTFRPHI 9
FT ++ TP PP+ + P+P KYLGV LD +TF H+
Sbjct: 722 FTLKRRTP------PPVYIEEVPVPQPNAAKYLGVLLDRRLTFSKHV 762
>X17551-2|CAA35587.1| 888|Drosophila melanogaster protein (
D.melanogaster white-one mutant DNA with Doc retroposon,
inserted inwhite locuspromoter region. ).
Length = 888
Score = 35.9 bits (79), Expect = 0.027
Identities = 17/35 (48%), Positives = 23/35 (65%)
Frame = -1
Query: 107 PPITLFRQPIPWARKVKYLGVTLDASMTFRPHIKS 3
PP+ L IP A +V YLGV LD +T+R HI++
Sbjct: 721 PPLVLNNICIPQADEVTYLGVHLDRRLTWRKHIEA 755
>AY047531-1|AAK77263.1| 888|Drosophila melanogaster GH03753p
protein.
Length = 888
Score = 35.9 bits (79), Expect = 0.027
Identities = 17/35 (48%), Positives = 23/35 (65%)
Frame = -1
Query: 107 PPITLFRQPIPWARKVKYLGVTLDASMTFRPHIKS 3
PP+ L IP A +V YLGV LD +T+R HI++
Sbjct: 721 PPLVLNNICIPQADEVTYLGVHLDRRLTWRKHIEA 755
>AY180919-1|AAN87272.1| 884|Drosophila melanogaster ORF1 protein.
Length = 884
Score = 34.7 bits (76), Expect = 0.061
Identities = 14/50 (28%), Positives = 26/50 (52%)
Frame = -1
Query: 152 VFTTRKPTPILTHESPPITLFRQPIPWARKVKYLGVTLDASMTFRPHIKS 3
+F T++ P + + + PI W ++YLG+ D +TF+ HI +
Sbjct: 741 IFFTKRRKPRYLPDRQ-LRILDSPIQWVDNIRYLGIIFDKKLTFKYHINN 789
>AY060438-1|AAL25477.1| 906|Drosophila melanogaster LD46618p
protein.
Length = 906
Score = 34.7 bits (76), Expect = 0.061
Identities = 18/49 (36%), Positives = 28/49 (57%)
Frame = -1
Query: 149 FTTRKPTPILTHESPPITLFRQPIPWARKVKYLGVTLDASMTFRPHIKS 3
FT + +P+ + PI L + + KYLG+TLD +TF PH+K+
Sbjct: 726 FTLKTLSPV----TAPIELEGVILDQPSQAKYLGITLDKRLTFGPHLKA 770
>AF456125-1|AAL57609.1| 832|Drosophila melanogaster reverse
transcriptase protein.
Length = 832
Score = 34.7 bits (76), Expect = 0.061
Identities = 14/50 (28%), Positives = 26/50 (52%)
Frame = -1
Query: 152 VFTTRKPTPILTHESPPITLFRQPIPWARKVKYLGVTLDASMTFRPHIKS 3
+F T++ P + + + PI W ++YLG+ D +TF+ HI +
Sbjct: 689 IFFTKRRKPRYLPDRQ-LRILDSPIQWVDNIRYLGIIFDKKLTFKYHINN 737
>X51968-2|CAA36227.1| 1021|Drosophila melanogaster protein (
Drosophila melanogasterDNA for type I retrotransposable
element R1Dm. ).
Length = 1021
Score = 31.5 bits (68), Expect = 0.57
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = -1
Query: 110 SPPITLFRQPIPWARKVKYLGVTLDASMTFRPHIKS 3
+P + + +P+ R +YLG+T+ M F HI S
Sbjct: 718 APTVRFAGRNLPYVRSCRYLGITVSEGMKFLTHIAS 753
>M22874-2|AAA28675.1| 916|Drosophila melanogaster protein (
D.melanogaster LINEelement J-1, clone J-1. ).
Length = 916
Score = 30.7 bits (66), Expect = 1.00
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = -1
Query: 119 THESPPITLFRQPIPWARKVKYLGVTLDASMTFRPHI 9
T P ++L + I + KYLG+TLD +TF HI
Sbjct: 731 TGSCPGVSLNGRLIRHHQAYKYLGITLDRKLTFSRHI 767
>AY089343-1|AAL90081.2| 718|Drosophila melanogaster AT16518p
protein.
Length = 718
Score = 30.7 bits (66), Expect = 1.00
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = -1
Query: 119 THESPPITLFRQPIPWARKVKYLGVTLDASMTFRPHI 9
T P ++L + I + KYLG+TLD +TF HI
Sbjct: 533 TGSCPGVSLNGRLIRHHQAYKYLGITLDRKLTFSRHI 569
>AY600955-2|AAT12845.1| 1092|Drosophila melanogaster pol protein
protein.
Length = 1092
Score = 28.7 bits (61), Expect = 4.0
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = -1
Query: 152 VFTTRKPTPILTHESPPITLFRQPIPWARKVKYLGVTLDASMTFRPHI 9
+FT + P S + + Q I K YLGVTLD+ +T H+
Sbjct: 782 IFTLKNDLPT---NSMNVKIKGQTIKKESKQSYLGVTLDSKLTLSSHV 826
>AE014297-4736|AAF57144.1| 526|Drosophila melanogaster CG11340-PA
protein.
Length = 526
Score = 28.7 bits (61), Expect = 4.0
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = -1
Query: 335 SQYSYNGCPTLQTGTNYCFMAEIGRLVVPTCADSQEVVPPV 213
SQ + N CP+L+ + M + RL P D +VPPV
Sbjct: 54 SQSTVNNCPSLKNAESMALMELLTRLTAPCRYD--RMVPPV 92
>U02279-1|AAA18301.1| 964|Drosophila melanogaster protein (
Drosophila melanogastertelomere-associated transposons
TART, TART-A and HeT-A,and TART-A ORF2 gene, partial
cds. ).
Length = 964
Score = 28.3 bits (60), Expect = 5.3
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -1
Query: 86 QPIPWARKVKYLGVTLDASMTFRPHI 9
Q I K YLGV LD+ +T PH+
Sbjct: 673 QAIKKESKQSYLGVILDSKLTLSPHV 698
>AY561850-2|AAS68534.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 28.3 bits (60), Expect = 5.3
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -1
Query: 86 QPIPWARKVKYLGVTLDASMTFRPHI 9
Q I K YLGV LD+ +T PH+
Sbjct: 789 QAIKKESKQSYLGVILDSKLTLSPHV 814
>AY035777-2|AAK77971.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 28.3 bits (60), Expect = 5.3
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -1
Query: 86 QPIPWARKVKYLGVTLDASMTFRPHI 9
Q I K YLGV LD+ +T PH+
Sbjct: 789 QAIKKESKQSYLGVILDSKLTLSPHV 814
>AM040245-1|CAJ13341.1| 1042|Drosophila melanogaster pol protein
protein.
Length = 1042
Score = 28.3 bits (60), Expect = 5.3
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -1
Query: 86 QPIPWARKVKYLGVTLDASMTFRPHI 9
Q I K YLGV LD+ +T PH+
Sbjct: 751 QAIKKESKQSYLGVILDSKLTLSPHV 776
>AJ566116-2|CAD92793.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 28.3 bits (60), Expect = 5.3
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -1
Query: 86 QPIPWARKVKYLGVTLDASMTFRPHI 9
Q I K YLGV LD+ +T PH+
Sbjct: 789 QAIKKESKQSYLGVILDSKLTLSPHV 814
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,469,434
Number of Sequences: 53049
Number of extensions: 547389
Number of successful extensions: 892
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 858
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 892
length of database: 24,988,368
effective HSP length: 79
effective length of database: 20,797,497
effective search space used: 1539014778
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -