Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5088
         (461 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    24   0.69 
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    23   2.1  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    22   3.7  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    22   3.7  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    22   3.7  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   3.7  

>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 24.2 bits (50), Expect = 0.69
 Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
 Frame = -2

Query: 367 PPSALRYEF*GLSIV-TTAAPPFK 299
           PPSA RY+   ++ V TT AP F+
Sbjct: 449 PPSATRYDLGAVATVGTTVAPCFE 472


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 22.6 bits (46), Expect = 2.1
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = -1

Query: 278 MAEIGRLVVPTCADSQEVVPPVYFLYGYIMSSL 180
           + E+G  V+P    S ++ P  YFL+  + +SL
Sbjct: 259 LLELGWDVLPHPPYSPDLAPSDYFLFRSLQNSL 291


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 21.8 bits (44), Expect = 3.7
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +1

Query: 52  RYLTFLAQGMGCLKRVIGGDSWV 120
           +Y     Q + C  R+IG  SWV
Sbjct: 334 KYRNAFKQTICCKTRIIGRRSWV 356


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.8 bits (44), Expect = 3.7
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +3

Query: 237 VRTGRYHQPAYFSHEAVIRSGLKG 308
           +RT    QP YF H  +I   L G
Sbjct: 29  LRTRTKLQPTYFHHTYIIYESLCG 52


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.8 bits (44), Expect = 3.7
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +3

Query: 237 VRTGRYHQPAYFSHEAVIRSGLKG 308
           +RT    QP YF H  +I   L G
Sbjct: 29  LRTRTKLQPTYFHHTYIIYESLCG 52


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.8 bits (44), Expect = 3.7
 Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
 Frame = -3

Query: 132 NAHLNP*ITPDYSL*TTHTLGQEG-QVPGRYPGCIDDIPPAY 10
           N+ L P +   +S   +  LG+     PG YP     +PP+Y
Sbjct: 276 NSSLQPSLASHHSH-LSSALGRSACHSPGVYPSTAGFLPPSY 316


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 150,601
Number of Sequences: 438
Number of extensions: 3616
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12312900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)