Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5085
         (363 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr 1|...    26   2.1  
SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein |Schizosacch...    26   2.1  
SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|c...    25   2.7  
SPAP27G11.04c |||tRNA specific adenosine deaminase subunit Tad3 ...    25   3.6  
SPCC970.06 |||cargo receptor for soluble proteins |Schizosacchar...    25   4.8  
SPCC757.12 |||alpha-amylase homolog |Schizosaccharomyces pombe|c...    24   6.3  
SPAC26F1.13c |||leucine-tRNA ligase |Schizosaccharomyces pombe|c...    24   6.3  
SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr...    24   8.3  

>SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1402

 Score = 25.8 bits (54), Expect = 2.1
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +2

Query: 5   DGMATVLNNTPFRVIDYD 58
           DG AT+L + P  +IDY+
Sbjct: 263 DGTATILQSRPMDIIDYE 280


>SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1294

 Score = 25.8 bits (54), Expect = 2.1
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = -3

Query: 106 DTITFTVNRYCKELTVIVIDHTKWCVIEY 20
           D ++  +N + K +  IV   T W V++Y
Sbjct: 672 DLMSLPINEWVKNVMYIVTHETDWKVVQY 700


>SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 865

 Score = 25.4 bits (53), Expect = 2.7
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -2

Query: 122 TLPYHRHDHIYSKSILQRIDGNRNRSHEMVCY 27
           TL      + Y+K  +Q + GN   +H ++CY
Sbjct: 130 TLANSDSQNAYAKLSIQNVTGNWTWAHVVICY 161


>SPAP27G11.04c |||tRNA specific adenosine deaminase subunit Tad3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 315

 Score = 25.0 bits (52), Expect = 3.6
 Identities = 11/33 (33%), Positives = 14/33 (42%)
 Frame = -3

Query: 181 FPATFQNTIEVVNTKWPVCARSHITDTITFTVN 83
           FP          N+ WPV  R H+     FTV+
Sbjct: 123 FPPLTDEQFHEWNSVWPVSYRKHVQRQDVFTVH 155


>SPCC970.06 |||cargo receptor for soluble proteins
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 302

 Score = 24.6 bits (51), Expect = 4.8
 Identities = 9/28 (32%), Positives = 18/28 (64%)
 Frame = -2

Query: 242 GLQDTGSS*KSCKFMKKTDTFSRNFSKY 159
           G++    S ++C+FM++ +TF   F+ Y
Sbjct: 26  GIRKKTFSERACQFMEQAETFMAPFTPY 53


>SPCC757.12 |||alpha-amylase homolog |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 625

 Score = 24.2 bits (50), Expect = 6.3
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -3

Query: 313 LPLYNSMETSISQDFGGIHFVI 248
           LP Y S+    SQD G I F++
Sbjct: 323 LPRYTSITNDTSQDIGAIVFLL 344


>SPAC26F1.13c |||leucine-tRNA ligase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1111

 Score = 24.2 bits (50), Expect = 6.3
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -2

Query: 131 SLCTLPYHRHDHIYSKSILQRIDGNR 54
           +L T PY+ HD ++   I Q I+ +R
Sbjct: 804 NLRTGPYNFHDKVFENEINQLIESSR 829


>SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 501

 Score = 23.8 bits (49), Expect = 8.3
 Identities = 12/33 (36%), Positives = 14/33 (42%)
 Frame = -2

Query: 245 FGLQDTGSS*KSCKFMKKTDTFSRNFSKYHRSC 147
           F  Q T  S   C    +TD +     K HRSC
Sbjct: 18  FDRQKTTLSDDFCSLKGETDAWLVGMDKIHRSC 50


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,665,840
Number of Sequences: 5004
Number of extensions: 34185
Number of successful extensions: 88
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 112046990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)