Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5085
(363 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_03_0314 - 17600970-17600974,17601230-17601357,17601832-176019... 30 0.49
01_06_1769 - 39774042-39774566,39775448-39775498,39776371-39776604 29 0.85
05_01_0201 - 1441063-1443836,1444658-1445758,1446367-1447179,144... 29 1.5
02_01_0326 - 2230617-2230735,2231430-2231493,2231646-2231849,223... 28 2.6
01_06_0533 + 30052538-30054004 28 2.6
09_06_0153 - 21243108-21245660 27 3.4
02_02_0581 + 11770511-11770527,11770754-11771612,11771652-117717... 27 3.4
04_03_0948 - 21021021-21021040,21022743-21022818,21023167-210232... 26 7.9
02_04_0437 - 22938263-22938273,22938345-22938444,22938727-229389... 26 7.9
>02_03_0314 -
17600970-17600974,17601230-17601357,17601832-17601924,
17602145-17602257,17602520-17602627,17602724-17602828,
17603185-17603355,17603474-17603652,17603741-17603969,
17604841-17604955,17605137-17605312,17606060-17606143,
17606463-17606630,17607011-17607097,17607201-17607323
Length = 627
Score = 30.3 bits (65), Expect = 0.49
Identities = 14/51 (27%), Positives = 24/51 (47%)
Frame = +2
Query: 20 VLNNTPFRVIDYDYRQFFAISIYCKCDRVCDMGACTNWPFRIDNFYGILKS 172
V+N P ++ Y +F ++YC C +VC C + I G+ K+
Sbjct: 130 VVNTVP--MVAYKDVHYFPCTLYCPCQKVCLSYRCADMDREIPALMGVSKA 178
>01_06_1769 - 39774042-39774566,39775448-39775498,39776371-39776604
Length = 269
Score = 29.5 bits (63), Expect = 0.85
Identities = 11/32 (34%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Frame = -2
Query: 164 KYHRSCQYE-MASLCTLPYHRHDHIYSKSILQ 72
+YHRSC + + + P+++HD + KS+L+
Sbjct: 50 QYHRSCTLQPLNTRVPAPFYKHDFFFFKSLLK 81
>05_01_0201 -
1441063-1443836,1444658-1445758,1446367-1447179,
1447386-1447440
Length = 1580
Score = 28.7 bits (61), Expect = 1.5
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = -2
Query: 203 FMKKTDTFSRNFSKYHRSCQYEMASLCTLPYHRH 102
FM+K TF ++FSK Q++ + C Y++H
Sbjct: 736 FMEKLATFGKDFSKISSFLQHKTTADCIEFYYKH 769
>02_01_0326 -
2230617-2230735,2231430-2231493,2231646-2231849,
2231945-2232016,2232293-2232458,2232543-2232758,
2232873-2232949,2233056-2233151,2233237-2233280,
2233435-2233522,2233805-2233886,2233961-2234091,
2234264-2234350,2234804-2234887,2234985-2235144,
2235251-2235414,2235757-2235762,2235823-2235879,
2236159-2236278,2236387-2236496,2236587-2236689,
2236789-2236842,2237106-2237168,2237258-2237325,
2237412-2237469,2237684-2237750,2238233-2238309,
2238433-2238516,2238652-2238828,2239010-2239144
Length = 1010
Score = 27.9 bits (59), Expect = 2.6
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = -2
Query: 128 LCTLPYHRHDHIYSKSILQRIDGN 57
LC LP HR++ +Y++ I + I G+
Sbjct: 796 LCNLPPHRYEAVYARDIPEIITGD 819
>01_06_0533 + 30052538-30054004
Length = 488
Score = 27.9 bits (59), Expect = 2.6
Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
Frame = -1
Query: 297 PWRLRSLKILAVFTL*YLRAPGYWFFLKKL*IHEKNRYIFPQLFKIP*KLSI-RNGQFVH 121
P +R + L +LR YW+F K L N P+L I +S + G F+
Sbjct: 292 PETVRGIPAARAIELKFLRDDVYWYFFKVLAFGSANPDDHPRLASIAMDISAEQKGGFIG 351
Query: 120 APISQT 103
A I+ +
Sbjct: 352 ATIASS 357
>09_06_0153 - 21243108-21245660
Length = 850
Score = 27.5 bits (58), Expect = 3.4
Identities = 12/38 (31%), Positives = 17/38 (44%)
Frame = -2
Query: 176 RNFSKYHRSCQYEMASLCTLPYHRHDHIYSKSILQRID 63
+N HR + A L LPYH+ K + +R D
Sbjct: 563 KNAKNIHRRLEEVRAGLLLLPYHKEQRYDGKMVCRRDD 600
>02_02_0581 +
11770511-11770527,11770754-11771612,11771652-11771749,
11772903-11773631,11775159-11775231,11775698-11776066,
11777009-11777038
Length = 724
Score = 27.5 bits (58), Expect = 3.4
Identities = 15/55 (27%), Positives = 25/55 (45%)
Frame = +3
Query: 75 QYRFTVNVIVSVIWERAQTGHFVLTTSMVF*KVAGKCIGFFHEFTTFLRRTSILE 239
QY+ ++ +++ E+A+ L + F GKC F E F+R I E
Sbjct: 27 QYKEAEPIMDNIMTEKAKLVSRALLIELYFLHKMGKCPQHFDESNVFIREDGIAE 81
>04_03_0948 -
21021021-21021040,21022743-21022818,21023167-21023214,
21023655-21023745,21024524-21024636,21024718-21024778,
21025816-21026007,21026029-21026762
Length = 444
Score = 26.2 bits (55), Expect = 7.9
Identities = 6/11 (54%), Positives = 8/11 (72%)
Frame = -1
Query: 324 ESWDCRCTIPW 292
+ WDC C +PW
Sbjct: 376 DDWDCSCCLPW 386
>02_04_0437 -
22938263-22938273,22938345-22938444,22938727-22938908,
22938989-22939092,22939792-22939857,22940032-22940105,
22940241-22940309,22940902-22941028,22941740-22942971,
22943163-22943486,22943500-22943793
Length = 860
Score = 26.2 bits (55), Expect = 7.9
Identities = 10/28 (35%), Positives = 14/28 (50%)
Frame = +1
Query: 244 KISQSEYRQNLERSKSPWNCTTAVPTFK 327
K + +NL +SPWNC PT +
Sbjct: 819 KTEMKKILKNLTGLRSPWNCPHGRPTMR 846
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,018,751
Number of Sequences: 37544
Number of extensions: 192776
Number of successful extensions: 468
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 462
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 468
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 566473892
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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