Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5085
         (363 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U78092-1|AAB36684.1|  297|Caenorhabditis elegans LIN-7 protein.        29   1.3  
AL034488-17|CAA22459.2|  316|Caenorhabditis elegans Hypothetical...    29   1.3  
AL034488-16|CAN99708.1|  317|Caenorhabditis elegans Hypothetical...    29   1.3  
Z93390-4|CAJ76953.1|  347|Caenorhabditis elegans Hypothetical pr...    28   2.3  
Z93390-3|CAB07676.1|  680|Caenorhabditis elegans Hypothetical pr...    28   2.3  
Z19157-4|CAA79570.1| 1474|Caenorhabditis elegans Hypothetical pr...    26   9.3  
U41542-2|AAR30212.1|  623|Caenorhabditis elegans Suppressor of p...    26   9.3  
U41542-1|AAR30211.1|  684|Caenorhabditis elegans Suppressor of p...    26   9.3  

>U78092-1|AAB36684.1|  297|Caenorhabditis elegans LIN-7 protein.
          Length = 297

 Score = 28.7 bits (61), Expect = 1.3
 Identities = 16/52 (30%), Positives = 26/52 (50%)
 Frame = +2

Query: 152 FYGILKSCGKMYRFFS*IYNFFKKNQYPGARRYHKVNTAKILRDRSLHGIVQ 307
           F GI +  G++ R    + N FK N +PG   Y++ +  + L      GIV+
Sbjct: 25  FRGIFRKDGEVVRKDDLLVNQFKMNYHPGLNVYYENDRGERLLRAHCDGIVR 76


>AL034488-17|CAA22459.2|  316|Caenorhabditis elegans Hypothetical
           protein Y54G11A.10b protein.
          Length = 316

 Score = 28.7 bits (61), Expect = 1.3
 Identities = 16/52 (30%), Positives = 26/52 (50%)
 Frame = +2

Query: 152 FYGILKSCGKMYRFFS*IYNFFKKNQYPGARRYHKVNTAKILRDRSLHGIVQ 307
           F GI +  G++ R    + N FK N +PG   Y++ +  + L      GIV+
Sbjct: 25  FRGIFRKDGEVVRKDDLLVNQFKMNYHPGLNVYYENDRGERLLRAHCDGIVR 76


>AL034488-16|CAN99708.1|  317|Caenorhabditis elegans Hypothetical
           protein Y54G11A.10a protein.
          Length = 317

 Score = 28.7 bits (61), Expect = 1.3
 Identities = 16/52 (30%), Positives = 26/52 (50%)
 Frame = +2

Query: 152 FYGILKSCGKMYRFFS*IYNFFKKNQYPGARRYHKVNTAKILRDRSLHGIVQ 307
           F GI +  G++ R    + N FK N +PG   Y++ +  + L      GIV+
Sbjct: 25  FRGIFRKDGEVVRKDDLLVNQFKMNYHPGLNVYYENDRGERLLRAHCDGIVR 76


>Z93390-4|CAJ76953.1|  347|Caenorhabditis elegans Hypothetical
           protein T23B5.1b protein.
          Length = 347

 Score = 27.9 bits (59), Expect = 2.3
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = -2

Query: 188 DTFSRNFSKYHRSCQYEMASLCTLPYHRHDHIYSKSILQRID 63
           D +  N  K+  S +YE ASL  L   R D  Y K+++  ID
Sbjct: 94  DFYDENLQKHEDSLRYETASLDQLQKIRDDS-YFKAMMGEID 134


>Z93390-3|CAB07676.1|  680|Caenorhabditis elegans Hypothetical
           protein T23B5.1a protein.
          Length = 680

 Score = 27.9 bits (59), Expect = 2.3
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = -2

Query: 188 DTFSRNFSKYHRSCQYEMASLCTLPYHRHDHIYSKSILQRID 63
           D +  N  K+  S +YE ASL  L   R D  Y K+++  ID
Sbjct: 427 DFYDENLQKHEDSLRYETASLDQLQKIRDDS-YFKAMMGEID 467


>Z19157-4|CAA79570.1| 1474|Caenorhabditis elegans Hypothetical
           protein ZC84.6 protein.
          Length = 1474

 Score = 25.8 bits (54), Expect = 9.3
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = +2

Query: 92  KCDRVCDMGACTNWPFRIDNFYGILKSCGK 181
           +C+  C +G C N    + +  G L+SC +
Sbjct: 593 ECENYCGVGGCANGGSPLRDSNGALQSCSE 622


>U41542-2|AAR30212.1|  623|Caenorhabditis elegans Suppressor of
           presenilin defectprotein 3, isoform b protein.
          Length = 623

 Score = 25.8 bits (54), Expect = 9.3
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = +1

Query: 229 VSWSPKISQSEYRQNLERSKSPWNC 303
           VSW+       +R ++++SK  W C
Sbjct: 269 VSWNVSSLWRHFRHHIQKSKQSWTC 293


>U41542-1|AAR30211.1|  684|Caenorhabditis elegans Suppressor of
           presenilin defectprotein 3, isoform a protein.
          Length = 684

 Score = 25.8 bits (54), Expect = 9.3
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = +1

Query: 229 VSWSPKISQSEYRQNLERSKSPWNC 303
           VSW+       +R ++++SK  W C
Sbjct: 269 VSWNVSSLWRHFRHHIQKSKQSWTC 293


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,138,269
Number of Sequences: 27780
Number of extensions: 191784
Number of successful extensions: 568
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 551
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 568
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 503476126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)