Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5080
         (742 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC18H10.06c |swd2|swd2.1|COMPASS complex subunit Swd2|Schizosa...    27   2.1  
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c...    27   2.1  
SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase |Schi...    27   3.7  

>SPBC18H10.06c |swd2|swd2.1|COMPASS complex subunit
           Swd2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 357

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -2

Query: 306 ILGNFICNLASSQILAHINYYYEHGNSL 223
           I G F+ +LAS +  AH+  +  H NSL
Sbjct: 56  ISGKFVKSLASKKYGAHLGRFTHHSNSL 83


>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1687

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 19/49 (38%), Positives = 26/49 (53%)
 Frame = -1

Query: 628 NLFNVNQSAISFFNYN*IVLFQ*NFQNVILTAKIDTIHCKCEKLFELEK 482
           N FN N SAI  +    + L   +F+N ILT +I    CKC  L  L++
Sbjct: 495 NFFNYNNSAIDSYAKCTLNLDS-DFENGILTYEILYKKCKCSLLSLLKQ 542


>SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1419

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +3

Query: 642 SHLPTEFVDPLPSTLYNFYKQRT 710
           SHLPT++  P+PS L     +RT
Sbjct: 28  SHLPTDYSRPVPSRLVEAVFERT 50


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,833,762
Number of Sequences: 5004
Number of extensions: 56027
Number of successful extensions: 109
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)