Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5080
         (742 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0686 - 5184061-5184267,5184655-5184762,5185405-5185578,518...    29   3.9  

>07_01_0686 -
           5184061-5184267,5184655-5184762,5185405-5185578,
           5185680-5185808,5185891-5186178,5186341-5186570,
           5186619-5187516
          Length = 677

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 14/44 (31%), Positives = 25/44 (56%)
 Frame = -2

Query: 720 TKHPSFAYRSYIKSKVKGQRTPLEDET*KFQIYLMLINRQYHFS 589
           T HPSF+ +SY+      Q +PL +E     I++ +++   HF+
Sbjct: 404 TTHPSFSPQSYLDMSTVWQSSPLPNE--PVDIFIGILSSGNHFA 445


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,833,282
Number of Sequences: 37544
Number of extensions: 310673
Number of successful extensions: 530
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 522
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 530
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1957111448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)