Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5080
         (742 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014297-3266|AAF56092.1|  768|Drosophila melanogaster CG17111-P...    31   2.2  
BT004850-1|AAO45206.1|  252|Drosophila melanogaster RE68138p pro...    29   8.8  
AE014134-829|AAF52190.2|  252|Drosophila melanogaster CG3792-PA ...    29   8.8  

>AE014297-3266|AAF56092.1|  768|Drosophila melanogaster CG17111-PA
           protein.
          Length = 768

 Score = 30.7 bits (66), Expect = 2.2
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = -3

Query: 596 IFQL*LNRVVPMKLSKRYLNSENRYYSLQM*KAFRARKSSNE 471
           + QL L ++V  +    YLN++NR Y  +M   F+ R    E
Sbjct: 15  LHQLQLQKIVGFRPPLEYLNADNRIYGPEMVSNFKTRNGQQE 56


>BT004850-1|AAO45206.1|  252|Drosophila melanogaster RE68138p
           protein.
          Length = 252

 Score = 28.7 bits (61), Expect = 8.8
 Identities = 16/43 (37%), Positives = 26/43 (60%)
 Frame = -2

Query: 342 KLINSRSGLKITILGNFICNLASSQILAHINYYYEHGNSLSSY 214
           K++NS+SG  I I+G  +  LA   I  H++Y + HG   S++
Sbjct: 59  KILNSKSGEGINIVGVVLDLLA---ISFHLSYNFMHGYPFSAW 98


>AE014134-829|AAF52190.2|  252|Drosophila melanogaster CG3792-PA
           protein.
          Length = 252

 Score = 28.7 bits (61), Expect = 8.8
 Identities = 16/43 (37%), Positives = 26/43 (60%)
 Frame = -2

Query: 342 KLINSRSGLKITILGNFICNLASSQILAHINYYYEHGNSLSSY 214
           K++NS+SG  I I+G  +  LA   I  H++Y + HG   S++
Sbjct: 59  KILNSKSGEGINIVGVVLDLLA---ISFHLSYNFMHGYPFSAW 98


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,194,463
Number of Sequences: 53049
Number of extensions: 558016
Number of successful extensions: 861
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 836
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 861
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3355404063
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)