Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5078
         (646 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1420.01c ||SPAC56E4.08c|DUF1752 family protein|Schizosacchar...    28   1.3  
SPBC27.08c |sua1|SPBC28F2.01c|sulfate adenylyltransferase |Schiz...    27   3.1  
SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit Srb9...    26   5.3  
SPAC56F8.04c |coq2|ppt1|para-hydroxybenzoate--polyprenyltransfer...    25   7.1  
SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe...    25   9.3  
SPBC3H7.02 |||sulfate transporter |Schizosaccharomyces pombe|chr...    25   9.3  
SPCC1020.11c |||DUF786 family protein|Schizosaccharomyces pombe|...    25   9.3  

>SPAC1420.01c ||SPAC56E4.08c|DUF1752 family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 580

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -2

Query: 69  WVKLHEPQEPHLTPRGPCP 13
           WV + E + PH T R P P
Sbjct: 418 WVSVDEAESPHFTKRSPAP 436


>SPBC27.08c |sua1|SPBC28F2.01c|sulfate adenylyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 490

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 11/40 (27%), Positives = 18/40 (45%)
 Frame = +2

Query: 269 FP*STWRHEVNFSNRNPYFRTYSR*LIKKAVRQSKVIIIH 388
           F  + W   V F  RNP  R +    ++ A +    ++IH
Sbjct: 181 FQRNNWNRVVAFQTRNPMHRAHRELTVRAAKQHGARVLIH 220


>SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit
           Srb9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1223

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -1

Query: 115 LKHGFGFEKSTSCLKVGQTSRTSGTPFNTTWTVPSC 8
           LKH +GF  +T+   VG T  +S   F  +W +  C
Sbjct: 262 LKHRYGFSLTTTSKWVGVTLESSALEF--SWPLELC 295


>SPAC56F8.04c
           |coq2|ppt1|para-hydroxybenzoate--
           polyprenyltransferaseCoq2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 358

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +3

Query: 78  HEVDFSNPKPCFRTYRR 128
           ++VD  +PK CFR ++R
Sbjct: 317 YKVDLDDPKDCFRWFKR 333


>SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 537

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
 Frame = +2

Query: 146 LCYHNTL--VLFFLLFYVITVINSTVHVILLSGLPEII 253
           L Y+ TL  + F++LF  + ++    H + L+G+P  I
Sbjct: 409 LMYNETLASIQFWILFIGVNIVFGPQHFLGLNGMPRRI 446


>SPBC3H7.02 |||sulfate transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 877

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = +2

Query: 368 SKVIIIHLFDIIIPW 412
           S VII  +FD+IIPW
Sbjct: 490 SAVIIHSVFDLIIPW 504


>SPCC1020.11c |||DUF786 family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 102

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 16/53 (30%), Positives = 26/53 (49%)
 Frame = -2

Query: 354 FFIN*RLYVLKYGFRFEKLTSCLQVDYGNHFVIPIISGSPLNNITWTVLFITV 196
           FF++  L+ LK       LT   Q  Y   ++  I+ G+P   +TWT+ +  V
Sbjct: 40  FFVSFLLFALKMR---GNLTKYYQPGY-KFWIAKILDGAPSYVLTWTLFYSLV 88


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,756,531
Number of Sequences: 5004
Number of extensions: 56245
Number of successful extensions: 113
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)