Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5078
         (646 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.     25   0.63 
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    22   4.4  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    22   5.8  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    22   5.8  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    21   7.7  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    21   7.7  
AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C prot...    21   7.7  

>AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.
          Length = 247

 Score = 25.0 bits (52), Expect = 0.63
 Identities = 9/28 (32%), Positives = 18/28 (64%)
 Frame = +2

Query: 110 LQNIPPLIINKSLCYHNTLVLFFLLFYV 193
           +Q    +I+ K++C+   ++L FL F+V
Sbjct: 215 IQGTGTIILKKTVCFVIPIMLLFLAFFV 242


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +2

Query: 242 PEIIGITK*FP*STWRHEVNFSNRNPYFRTYSR 340
           P ++G  K    S WR   N  +  P+F+TY +
Sbjct: 123 PSVVGRKKS---SGWRKLRNIVHWTPFFQTYKK 152


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +2

Query: 278 STWRHEVNFSNRNPYFRTYSR 340
           S WR   N  +  P+F+TY +
Sbjct: 217 SGWRKLRNIVHWTPFFQTYKK 237


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +2

Query: 278 STWRHEVNFSNRNPYFRTYSR 340
           S WR   N  +  P+F+TY +
Sbjct: 451 SGWRKLRNIVHWTPFFQTYKK 471


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = -1

Query: 517 GHGIHFVIAIIPGNPLNITW 458
           G  + F++ I   NPLN+ +
Sbjct: 634 GFPLQFLVVISSSNPLNVPY 653


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 5/13 (38%), Positives = 9/13 (69%)
 Frame = +2

Query: 467 IKWVTWDYCNYKM 505
           +KW +W Y  Y++
Sbjct: 147 LKWASWTYDGYQL 159


>AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C
           protein.
          Length = 149

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 8/28 (28%), Positives = 14/28 (50%)
 Frame = +2

Query: 110 LQNIPPLIINKSLCYHNTLVLFFLLFYV 193
           L   PP ++    C+     L+F++ YV
Sbjct: 40  LSTKPPFLVQLHSCFQTMDRLYFVMEYV 67


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,423
Number of Sequences: 438
Number of extensions: 4059
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19438227
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)