Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5077
         (656 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    30   0.26 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    29   0.59 
SPAC1805.03c |trm13||tRNA 2'-O-methyltransferase Trm13 |Schizosa...    28   1.4  
SPCC5E4.05c |||serine hydrolase |Schizosaccharomyces pombe|chr 3...    27   1.8  
SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   3.1  
SPCC1919.03c |||AMP-activated protein kinase beta subunit |Schiz...    25   9.6  

>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 30.3 bits (65), Expect = 0.26
 Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
 Frame = +1

Query: 52   LPRQGARAPA--LPSREARPLPRQGSSAPTLPRGETRAIPRRS*GARTAALP 201
            +P+  ++AP   LPS +A P+P   ++ P      T  +P+ S GA +A  P
Sbjct: 1014 VPKLSSKAPPVPLPSADAPPIPVPSTAPPVPIPTSTPPVPKSSSGAPSAPPP 1065



 Score = 25.4 bits (53), Expect = 7.3
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = +1

Query: 52   LPRQGARAPALPSREARPLPRQGSSAPTLPRGETRAIP 165
            L +  + +PA P     P+P+  S AP +P     A P
Sbjct: 996  LSKPVSTSPAAPLARVPPVPKLSSKAPPVPLPSADAPP 1033


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 29.1 bits (62), Expect = 0.59
 Identities = 32/106 (30%), Positives = 39/106 (36%), Gaps = 2/106 (1%)
 Frame = +1

Query: 16  GALSRTRTS*QALPRQ--GARAPALPSREARPLPRQGSSAPTLPRGETRAIPRRS*GART 189
           G  SRT T     P     +  P+LP      LP    +AP LP     A P  +     
Sbjct: 407 GNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAA 466

Query: 190 AALPRCEARRCPRQGARRQALPRACACSLPRREASAFCCPS*EASG 327
             LP   A   P   A   A P A    LP+++  A    S  ASG
Sbjct: 467 PPLPPA-APAPPPAPAPAPAAPVASIAELPQQDGRANLMASIRASG 511


>SPAC1805.03c |trm13||tRNA 2'-O-methyltransferase Trm13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 407

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = -2

Query: 292 WLLDGVRSRHMHGVGPVDGHLDGDTDVLHNGVGLRYGHL 176
           W ++ +R  HMH  G  D H+ G +      +GL+  H+
Sbjct: 330 WAVNSLRE-HMHASGGADSHISGLSHEERVKIGLKCKHI 367


>SPCC5E4.05c |||serine hydrolase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 378

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +1

Query: 67  ARAPALPSREARPLPRQGSSAPTLPRGETRAIP 165
           A + A+P  EA+P P   S+A   P  E+  +P
Sbjct: 316 ATSDAVPPAEAKPEPVPASAAERAPTSESTTVP 348


>SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 262

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +1

Query: 55  PRQGARAPALPSREARPLPRQGSSAPTL 138
           P Q  + PALPSR    LP +  S P++
Sbjct: 105 PSQPPKEPALPSRGTPSLPSRPGSRPSV 132


>SPCC1919.03c |||AMP-activated protein kinase beta subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 298

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +1

Query: 70  RAPALPSREARPLPRQGSSAPTLPRGET 153
           RA A+PS++A   P   ++ P  PR ++
Sbjct: 12  RAHAVPSQDATTTPDNANNVPKEPRAQS 39


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,748,187
Number of Sequences: 5004
Number of extensions: 32804
Number of successful extensions: 99
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)