Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5074
(700 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 50 3e-07
SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein ... 48 1e-06
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 44 2e-05
SPBC12C2.05c |||diacylglycerol binding protein Bzz1 |Schizosacch... 44 3e-05
SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces... 42 6e-05
SPCC24B10.13 |skb5||Shk1 kinase binding protein 5|Schizosaccharo... 40 3e-04
SPBC1734.08 |hse1||STAM like protein Hse1|Schizosaccharomyces po... 39 8e-04
SPAPJ696.02 |||actin cortical patch component Lsb4 |Schizosaccha... 36 0.004
SPAC22H10.07 |scd2|ral3|scaffold protein Scd2|Schizosaccharomyce... 36 0.007
SPAC7D4.02c |||src |Schizosaccharomyces pombe|chr 1|||Manual 31 0.21
SPBC16H5.11c |skb1|rmt5|type II protein arginine N-methyltransfe... 30 0.37
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po... 29 0.64
SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|ch... 27 2.6
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy... 27 2.6
SPAC23G3.12c |||serine protease |Schizosaccharomyces pombe|chr 1... 26 6.0
SPCC553.09c |spb70|pol12|DNA polymerase alpha B-subunit|Schizosa... 26 6.0
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ... 26 6.0
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 50.0 bits (114), Expect = 3e-07
Identities = 20/48 (41%), Positives = 33/48 (68%)
Frame = +1
Query: 220 HDFTATADDELSFRKNQVLKILNMEDDMNWYRAELDGKEGLIPSNYIQ 363
+DF A A DEL+ + N + I+N +W++ +DGKEG++PSN+I+
Sbjct: 517 YDFIAEAADELTVKANMRVVIVNDTASSDWWKCSVDGKEGVVPSNFIK 564
Score = 36.3 bits (80), Expect = 0.004
Identities = 19/58 (32%), Positives = 32/58 (55%)
Frame = +1
Query: 190 PNLIMEALAKHDFTATADDELSFRKNQVLKILNMEDDMNWYRAELDGKEGLIPSNYIQ 363
P+ M+AL +D+T + DE+SF+ +Q L + D +W + GL P NY++
Sbjct: 81 PSTKMKAL--YDYTQQSVDEISFQADQTLDCYG-DTDSDWILVGFNNNFGLAPRNYVE 135
>SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein
Lsb1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 296
Score = 48.0 bits (109), Expect = 1e-06
Identities = 21/60 (35%), Positives = 36/60 (60%)
Frame = +1
Query: 199 IMEALAKHDFTATADDELSFRKNQVLKILNMEDDMNWYRAELDGKEGLIPSNYIQMKNHS 378
+ LA +DF +L F +V+ +L ++ +W+R EL+GKEG+ PSNY+++ S
Sbjct: 142 VERVLAMYDFPGPDAGDLGFHAGEVIIVLEHVNN-DWWRGELNGKEGIFPSNYVRLLEDS 200
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 44.4 bits (100), Expect = 2e-05
Identities = 19/50 (38%), Positives = 32/50 (64%)
Frame = +1
Query: 214 AKHDFTATADDELSFRKNQVLKILNMEDDMNWYRAELDGKEGLIPSNYIQ 363
A +D+ A D+ELSF +++++ ++ D NW+ E G GL PSNY++
Sbjct: 807 AIYDYQAQEDNELSFFEDEIIANVDCVDP-NWWEGECHGHRGLFPSNYVE 855
Score = 41.5 bits (93), Expect = 1e-04
Identities = 16/53 (30%), Positives = 32/53 (60%)
Frame = +1
Query: 208 ALAKHDFTATADDELSFRKNQVLKILNMEDDMNWYRAELDGKEGLIPSNYIQM 366
A+ +D++ ++E+ +N+ ++IL DD W G++GL PSNY+++
Sbjct: 730 AIVIYDYSPEEENEIELVENEQIQILEFVDDGWWLGENSKGQQGLFPSNYVEI 782
>SPBC12C2.05c |||diacylglycerol binding protein Bzz1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 43.6 bits (98), Expect = 3e-05
Identities = 15/57 (26%), Positives = 34/57 (59%)
Frame = +1
Query: 202 MEALAKHDFTATADDELSFRKNQVLKILNMEDDMNWYRAELDGKEGLIPSNYIQMKN 372
++ + +DFT + ++ + Q +L +D W R ++DG +GLIP++Y+++ +
Sbjct: 518 VDGVVLYDFTGEHEGVITASEGQEFTLLEPDDGSGWVRVKIDGTDGLIPASYVKLND 574
Score = 37.1 bits (82), Expect = 0.002
Identities = 15/49 (30%), Positives = 27/49 (55%)
Frame = +1
Query: 214 AKHDFTATADDELSFRKNQVLKILNMEDDMNWYRAELDGKEGLIPSNYI 360
A + +TA +D ELS ++ ++++ N W L+G G P+NY+
Sbjct: 591 ALYAYTAQSDMELSIQEGDIIQVTNRNAGNGWSEGILNGVTGQFPANYV 639
>SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 466
Score = 42.3 bits (95), Expect = 6e-05
Identities = 17/54 (31%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Frame = +1
Query: 211 LAKHDFTATADDELSFRKNQVLKILNMEDDMN-WYRAELDGKEGLIPSNYIQMK 369
+A +D+ A A +LSF +++++ D+ N W+ L+G +G P NY+Q++
Sbjct: 413 VALYDYAAQAAGDLSFHAGDRIEVVSRTDNQNEWWIGRLNGAQGQFPGNYVQLE 466
>SPCC24B10.13 |skb5||Shk1 kinase binding protein
5|Schizosaccharomyces pombe|chr 3|||Manual
Length = 140
Score = 39.9 bits (89), Expect = 3e-04
Identities = 22/67 (32%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
Frame = +1
Query: 175 HFSEVPNLIMEALAKHDFTATADDELSFRKNQVLKILNMEDDMNWYRA--ELDGKEGLIP 348
H S N++ +A+A +DF D+EL F Q L IL+ D W A + G+ GL+P
Sbjct: 74 HPSASFNVLADAVALYDFEPLHDNELGFTTGQRLCILSESSD-GWLIAYDDASGRSGLVP 132
Query: 349 SNYIQMK 369
+++++
Sbjct: 133 ETFVKLE 139
>SPBC1734.08 |hse1||STAM like protein Hse1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 373
Score = 38.7 bits (86), Expect = 8e-04
Identities = 17/50 (34%), Positives = 27/50 (54%)
Frame = +1
Query: 214 AKHDFTATADDELSFRKNQVLKILNMEDDMNWYRAELDGKEGLIPSNYIQ 363
A +DF AT ELSF+K ++ +L +W++ G+ P NY+Q
Sbjct: 222 ALYDFAATEQGELSFKKGDIILVLE-SVYKDWWKGSCKNAVGIFPVNYVQ 270
>SPAPJ696.02 |||actin cortical patch component Lsb4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 36.3 bits (80), Expect = 0.004
Identities = 14/55 (25%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Frame = +1
Query: 205 EALAKHDFTATADDELSFRKNQVLKILNMEDDMN-WYRAELDGKEGLIPSNYIQM 366
+A A + F +LSF+K ++ I+ + W+ + +EG+ P+NY+++
Sbjct: 375 QARAMYSFAGEQPGDLSFQKGDIIDIVERSGSHDDWWTGRIGYREGIFPANYVKL 429
>SPAC22H10.07 |scd2|ral3|scaffold protein Scd2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 536
Score = 35.5 bits (78), Expect = 0.007
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Frame = +1
Query: 184 EVPNLIMEALAKHDFTATADDELSFRKNQVLKILNMEDDMNWYRA--ELDGKEGLIPSNY 357
E P ++ AL +D+TA E+SF K ++ E+D WY G G +P ++
Sbjct: 23 EPPRKVIRAL--YDYTARKATEVSFAKGDFFHVIGRENDKAWYEVCNPAAGTRGFVPVSH 80
Query: 358 IQ 363
+
Sbjct: 81 FE 82
>SPAC7D4.02c |||src |Schizosaccharomyces pombe|chr 1|||Manual
Length = 415
Score = 30.7 bits (66), Expect = 0.21
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Frame = +1
Query: 214 AKHDFTATADDELSFRKNQVLKILNMEDDMNWYRAELD---GKEGLIPSNYIQ 363
A + + AT E+ + L +LN + D W + G+ GL PSNYI+
Sbjct: 359 ALYAYKATLPSEIDLNVDDTLVVLNRQKDGWWKGLVVSPTVGRIGLFPSNYIE 411
>SPBC16H5.11c |skb1|rmt5|type II protein arginine
N-methyltransferase Skb1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 645
Score = 29.9 bits (64), Expect = 0.37
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Frame = +1
Query: 364 MKNHSWYYGRITRADAEKLLANKPEGGFLIRISE--SSPGDFSLSVKCPDGVQH 519
M+N + G++T + N P+ I +SE S GD LS +C DGVQH
Sbjct: 390 MRNRQDWAGKVTLVFGDMRTWN-PDYKIDILVSELLGSMGDNELSPECLDGVQH 442
>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2812
Score = 29.1 bits (62), Expect = 0.64
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = +1
Query: 184 EVPNLIMEALAKHDFTATADDELSFRKNQVLKILNMED 297
E+ N+++ L H +DD SFRK +L++L + +
Sbjct: 2012 EIRNVLLSLLQSHKQLDLSDDLASFRKYYILELLKISE 2049
>SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 979
Score = 27.1 bits (57), Expect = 2.6
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = +3
Query: 54 NASFLFNIVRQYVHYDYFTSLTLDILESLCTLRVIFKNSVTFQ 182
N L +I + Y + F L D+L+ LCT+ + +FQ
Sbjct: 676 NEPILLDIPQNYDNMSSFKPLAHDVLKKLCTIILFHAGFESFQ 718
>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2052
Score = 27.1 bits (57), Expect = 2.6
Identities = 15/59 (25%), Positives = 29/59 (49%)
Frame = +1
Query: 181 SEVPNLIMEALAKHDFTATADDELSFRKNQVLKILNMEDDMNWYRAELDGKEGLIPSNY 357
S + ++E+ KH + + + + + L +LN +D NW + L K G I S++
Sbjct: 16 SRLQKYLLESAEKHAYDSNEESKTHLLQEVFLSLLNYNED-NW-KYFLKEKPGAITSDF 72
>SPAC23G3.12c |||serine protease |Schizosaccharomyces pombe|chr
1|||Manual
Length = 996
Score = 25.8 bits (54), Expect = 6.0
Identities = 19/67 (28%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Frame = +1
Query: 124 TFWKVCVL*ELFLRIR*HFSEVPNLIMEALAKHDFTATADDELSFRKNQVLKI-LNMEDD 300
TF KV V+ L +++ H+ +L+ +A A++ + A DE+ +KN + ++ E D
Sbjct: 928 TFDKVPVV--LTIKMNKHYFPTIDLVQDAKAENGWRAVQYDEVGEKKNPSMGFTIDEEVD 985
Query: 301 MNWYRAE 321
N + E
Sbjct: 986 DNTFDTE 992
>SPCC553.09c |spb70|pol12|DNA polymerase alpha
B-subunit|Schizosaccharomyces pombe|chr 3|||Manual
Length = 574
Score = 25.8 bits (54), Expect = 6.0
Identities = 10/27 (37%), Positives = 19/27 (70%)
Frame = +1
Query: 241 DDELSFRKNQVLKILNMEDDMNWYRAE 321
D+EL +N++L+I NM++ +Y+ E
Sbjct: 7 DEELLDERNKLLQICNMDEQTMFYKWE 33
>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 2493
Score = 25.8 bits (54), Expect = 6.0
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +1
Query: 508 GVQHFKVLRDASSKFFLWVVKFN 576
G++ F V RDA +FFLW + N
Sbjct: 832 GIKEF-VNRDARKEFFLWALTIN 853
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,705,740
Number of Sequences: 5004
Number of extensions: 52083
Number of successful extensions: 160
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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