Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5074
         (700 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1169 + 28130783-28130899,28130987-28131427                       31   0.67 
11_01_0314 + 2339241-2339728,2342720-2343608                           29   3.5  
09_04_0226 - 15859439-15860377                                         29   3.5  
05_05_0310 - 23991461-23991652,23991780-23991965,23992813-239930...    28   6.2  
03_02_0473 + 8745721-8745994,8746083-8746090,8746232-8746324,874...    28   6.2  

>06_03_1169 + 28130783-28130899,28130987-28131427
          Length = 185

 Score = 31.5 bits (68), Expect = 0.67
 Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 4/55 (7%)
 Frame = +1

Query: 442 GFLIRISES-SPGDFSLSVKCPDGVQHF---KVLRDASSKFFLWVVKFNSLNELV 594
           GF +    S  PGDF  SV  P+G + +   KV +D++S  +L    FNS  EL+
Sbjct: 5   GFQLESGASIQPGDFIPSVSRPNGARQYMALKVFKDSASGDWLVYYGFNSDPELI 59


>11_01_0314 + 2339241-2339728,2342720-2343608
          Length = 458

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 35/138 (25%), Positives = 57/138 (41%), Gaps = 3/138 (2%)
 Frame = +1

Query: 274 LKILNMEDDMNWYRAELDGKEGLIPSNYIQMKNHSWYYGRITRADAEKLLANKPEGGFLI 453
           LK L   D  + Y AE+ G    + +  +  +       +  RA  E+ +    +  FL 
Sbjct: 62  LKRLGAGDIGSVYLAEVRGAATALVAAKVMDRKELEGRNKEGRARTEREILEAVDHPFLP 121

Query: 454 RISESSPGD---FSLSVKCPDGVQHFKVLRDASSKFFLWVVKFNSLNELVDYHRTASVSR 624
           R+   + GD     L+  CP G  H    R    +F    V+F +  E+V          
Sbjct: 122 RLFGVAEGDRWSCLLTEFCPGGDLHVLRQRQPHRRFSESAVRFYAA-EVV---AALEYVH 177

Query: 625 LQDVKLRDVVPEEMLVQA 678
           + D+  RD+ PE +LV+A
Sbjct: 178 MVDIVYRDLKPENVLVRA 195


>09_04_0226 - 15859439-15860377
          Length = 312

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +1

Query: 175 HFSEVPNLIMEALAKHDFTATADDELSFRKNQVLKILN 288
           +FS VP L     A +DF   ADD+  FR  ++ + L+
Sbjct: 147 YFSSVPRLFGGGEAAYDFVMKADDDTFFRLPELAESLS 184


>05_05_0310 -
           23991461-23991652,23991780-23991965,23992813-23993094,
           23993220-23993382,23993477-23993661,23994154-23994205,
           23994292-23994392,23995244-23995417
          Length = 444

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 22/81 (27%), Positives = 36/81 (44%)
 Frame = +1

Query: 454 RISESSPGDFSLSVKCPDGVQHFKVLRDASSKFFLWVVKFNSLNELVDYHRTASVSRLQD 633
           R+ E S  D ++ +  P GV H++++ D   K+         L  + D      V+ L D
Sbjct: 172 RVLEKSGKDHTILLVLPSGVYHYRIIVDGEPKY------VPELPHVAD--EGGQVANLLD 223

Query: 634 VKLRDVVPEEMLVQALYDFTP 696
           V   D +PE +   A +D  P
Sbjct: 224 V--HDYIPESLGSVAGFDSPP 242


>03_02_0473 + 8745721-8745994,8746083-8746090,8746232-8746324,
            8746665-8746893,8747314-8747420,8747560-8747622,
            8747883-8747983,8748996-8749090,8749330-8749350,
            8749987-8750082,8750188-8750308,8750415-8750570,
            8750679-8750869,8751207-8751478,8751853-8751954,
            8752006-8752038,8752132-8752308,8752397-8752466,
            8752512-8752585,8752667-8752908,8752983-8753129,
            8753526-8753751,8753893-8753970,8754378-8754521,
            8754829-8755008,8755335-8755394,8755484-8755523,
            8758653-8759137
          Length = 1294

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = +1

Query: 214  AKHDFTATADDELSFRKNQVLKILNMEDDMNWYRAELDGKEG 339
            A +DFTA  DDELS    + ++I    D   + + +  G++G
Sbjct: 1089 ALYDFTAGGDDELSLTAGEDVEIEYEVDGWYYVKKKRPGRDG 1130


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,017,580
Number of Sequences: 37544
Number of extensions: 319344
Number of successful extensions: 648
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 632
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 648
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)