Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5073
         (557 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC776.10c |cog6||Golgi transport complex peripheral subunit Co...    28   1.1  
SPCC794.01c |||glucose-6-phosphate 1-dehydrogenase |Schizosaccha...    25   7.5  
SPAC24C9.05c |mug70||conserved protein |Schizosaccharomyces pomb...    25   7.5  
SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyce...    25   10.0 

>SPBC776.10c |cog6||Golgi transport complex peripheral subunit Cog6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 675

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 13/46 (28%), Positives = 26/46 (56%)
 Frame = +2

Query: 362 LSKMSFRRVLGLAMEYQVNNSVF*FTNHWPKVRMAALVIVDSYSTY 499
           LS++S + +   +   +V NS+  + N W K    A ++++SY T+
Sbjct: 82  LSELSSQTLSVQSQLLKVKNSIDSYKNEWSKKTNDAQILLNSYETF 127


>SPCC794.01c |||glucose-6-phosphate 1-dehydrogenase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 475

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = -1

Query: 179 FDYSVKDPHTGDEKEHWETRDGDKV 105
           FDY   D    D  +HW  +D  KV
Sbjct: 150 FDYKSADAILSDLSKHWSAKDTFKV 174


>SPAC24C9.05c |mug70||conserved protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 730

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -1

Query: 491 YMSRLLPKPPF*LWAND 441
           Y +R LPKPP   W N+
Sbjct: 446 YSARQLPKPPVQAWQNE 462


>SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 960

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -2

Query: 85  LSKQKTLCSCINFILAYGKSSIFAGHM 5
           LS   TL     F+L  GKS  +AG +
Sbjct: 510 LSSASTLSDYFRFVLRVGKSLYYAGEL 536


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,394,616
Number of Sequences: 5004
Number of extensions: 50255
Number of successful extensions: 100
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 233995432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)