Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5073
         (557 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X61615-1|CAA43805.1| 1097|Homo sapiens leukemia inhibitory facto...    30   4.8  
AK126054-1|BAC86416.1|  926|Homo sapiens protein ( Homo sapiens ...    29   8.4  

>X61615-1|CAA43805.1| 1097|Homo sapiens leukemia inhibitory factor
           receptor protein.
          Length = 1097

 Score = 30.3 bits (65), Expect = 4.8
 Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
 Frame = +3

Query: 366 LRCRSEEFWDW-PW-NTKSIIRFSDLPIIGPKSEWRLW 473
           +RC +E FW W  W N K  +     P  GP + WR W
Sbjct: 509 IRCSTETFWKWSKWSNKKQHLTTEASPSKGPDT-WREW 545


>AK126054-1|BAC86416.1|  926|Homo sapiens protein ( Homo sapiens
           cDNA FLJ44066 fis, clone TESTI4036909, weakly  similar
           to Regulator of nonsense transcripts 1. ).
          Length = 926

 Score = 29.5 bits (63), Expect = 8.4
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +2

Query: 434 FTNHWPKVRMAALVIVDSYSTYLLITKNIDDYF 532
           F ++WP   +   ++V + ST L   KNI DYF
Sbjct: 342 FPSNWPTNMVVHALLVCNASTELTTLKNIQDYF 374


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 78,594,214
Number of Sequences: 237096
Number of extensions: 1625653
Number of successful extensions: 1990
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1966
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1990
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5590411794
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)