Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5073
         (557 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81534-5|CAB04348.2|  694|Caenorhabditis elegans Hypothetical pr...    29   2.3  
Z47074-2|CAA87377.2|  694|Caenorhabditis elegans Hypothetical pr...    29   2.3  
Z35604-2|CAA84677.1|  809|Caenorhabditis elegans Hypothetical pr...    27   9.1  
U19744-1|AAA85704.1|  809|Caenorhabditis elegans integrin beta p...    27   9.1  

>Z81534-5|CAB04348.2|  694|Caenorhabditis elegans Hypothetical
           protein F37H8.2 protein.
          Length = 694

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 18/71 (25%), Positives = 30/71 (42%)
 Frame = +2

Query: 305 FKEYGSKPALNKG**LTWYLSKMSFRRVLGLAMEYQVNNSVF*FTNHWPKVRMAALVIVD 484
           F+EY  +  +        +L K+SF  V+ +   + +   +  F N WP        +V 
Sbjct: 214 FQEYFGRLQMTADNFRMMFLEKLSFSFVISVTSLFIIEEGLEVFKNVWPHSSFRMWQLVT 273

Query: 485 SYSTYLLITKN 517
             +  L ITKN
Sbjct: 274 ILAIILTITKN 284


>Z47074-2|CAA87377.2|  694|Caenorhabditis elegans Hypothetical
           protein F37H8.2 protein.
          Length = 694

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 18/71 (25%), Positives = 30/71 (42%)
 Frame = +2

Query: 305 FKEYGSKPALNKG**LTWYLSKMSFRRVLGLAMEYQVNNSVF*FTNHWPKVRMAALVIVD 484
           F+EY  +  +        +L K+SF  V+ +   + +   +  F N WP        +V 
Sbjct: 214 FQEYFGRLQMTADNFRMMFLEKLSFSFVISVTSLFIIEEGLEVFKNVWPHSSFRMWQLVT 273

Query: 485 SYSTYLLITKN 517
             +  L ITKN
Sbjct: 274 ILAIILTITKN 284


>Z35604-2|CAA84677.1|  809|Caenorhabditis elegans Hypothetical
           protein ZK1058.2 protein.
          Length = 809

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 12/40 (30%), Positives = 24/40 (60%)
 Frame = +3

Query: 195 CLEHK*VVYYQRWQSVYLDKNFLLICQYRLI*I*SSPSKN 314
           C+E+K  V  Q+WQ+  L++     C++++I +   P+ N
Sbjct: 654 CVEYKNCVMCQQWQTGPLNETACDQCEFKVIPVEELPNLN 693


>U19744-1|AAA85704.1|  809|Caenorhabditis elegans integrin beta
           pat-3 protein.
          Length = 809

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 12/40 (30%), Positives = 24/40 (60%)
 Frame = +3

Query: 195 CLEHK*VVYYQRWQSVYLDKNFLLICQYRLI*I*SSPSKN 314
           C+E+K  V  Q+WQ+  L++     C++++I +   P+ N
Sbjct: 654 CVEYKNCVMCQQWQTGPLNETACDQCEFKVIPVEELPNLN 693


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,837,818
Number of Sequences: 27780
Number of extensions: 269246
Number of successful extensions: 545
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 536
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 545
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1144922904
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)