Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5070
         (634 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC012596-1|AAH12596.3|   78|Homo sapiens actin related protein 2...    30   7.8  
AF019888-1|AAB71548.1|  168|Homo sapiens Arp2/3 complex 20 kDa s...    30   7.8  
AF006087-1|AAB64192.1|  168|Homo sapiens p20-Arc protein.              30   7.8  

>BC012596-1|AAH12596.3|   78|Homo sapiens actin related protein 2/3
           complex, subunit 4, 20kDa protein.
          Length = 78

 Score = 29.9 bits (64), Expect = 7.8
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = -3

Query: 125 YLLWNFHPKSMTLEKLVHFVEHFVGRI 45
           +L+ NFH + M   KLV FV HF+  I
Sbjct: 26  FLITNFHTEQMYKHKLVDFVIHFMEEI 52


>AF019888-1|AAB71548.1|  168|Homo sapiens Arp2/3 complex 20 kDa
           subunit protein.
          Length = 168

 Score = 29.9 bits (64), Expect = 7.8
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = -3

Query: 125 YLLWNFHPKSMTLEKLVHFVEHFVGRI 45
           +L+ NFH + M   KLV FV HF+  I
Sbjct: 116 FLITNFHTEQMYKHKLVDFVIHFMEEI 142


>AF006087-1|AAB64192.1|  168|Homo sapiens p20-Arc protein.
          Length = 168

 Score = 29.9 bits (64), Expect = 7.8
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = -3

Query: 125 YLLWNFHPKSMTLEKLVHFVEHFVGRI 45
           +L+ NFH + M   KLV FV HF+  I
Sbjct: 116 FLITNFHTEQMYKHKLVDFVIHFMEEI 142


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 72,424,679
Number of Sequences: 237096
Number of extensions: 1328799
Number of successful extensions: 3372
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3295
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3371
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6916500330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)