Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5069
         (674 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces...    28   1.1  
SPBC32H8.06 |mug93||TPR repeat protein, meiotically spliced|Schi...    27   1.9  
SPBC3B9.15c |scp1||sterol regulatory element binding protein Scp...    25   7.6  
SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|ch...    25   10.0 
SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase Ubp8|Schizos...    25   10.0 

>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 897

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 9/16 (56%), Positives = 14/16 (87%)
 Frame = +1

Query: 562 DYRNLINRRHFLVQYY 609
           DY NLIN RHF+++++
Sbjct: 105 DYVNLINARHFMIEHF 120


>SPBC32H8.06 |mug93||TPR repeat protein, meiotically
           spliced|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 383

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 19/41 (46%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
 Frame = +1

Query: 466 SMGSTNNLTPGGAVSSSTHLSKK--RSVVH*TTLDYRNLIN 582
           ++G+ N +TP  A SS THL KK    VVH  T  Y  +IN
Sbjct: 33  AIGNENTITPVYADSSLTHLRKKSYTKVVHDCT--YALVIN 71


>SPBC3B9.15c |scp1||sterol regulatory element binding protein
           Scp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1086

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = -2

Query: 307 TLFTSNHKDHISNPRCL*LVEFKLSGPRCGWHLHDYFNIFIFFNSAF 167
           T+F  +   + S   C  L  F+ +GP C W +  Y  IF+   ++F
Sbjct: 267 TIFIQSGTAYFST--CSLLYFFERTGPICPWPMAYYIIIFMDIENSF 311


>SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 867

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = -2

Query: 406 LQCSNVQPLRNTTLHLR 356
           L CSNVQ L N  LHL+
Sbjct: 532 LICSNVQDLSNRILHLQ 548


>SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase
           Ubp8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 449

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 11/53 (20%), Positives = 23/53 (43%)
 Frame = -2

Query: 340 CNKL*VEPRLDTLFTSNHKDHISNPRCL*LVEFKLSGPRCGWHLHDYFNIFIF 182
           C    ++    +++ S +K     P  +  + +KLS   CG+   D    F++
Sbjct: 188 CMTCAIDDMFSSIYNSKNKSTFYGPTAVLNLMWKLSKSLCGYSQQDGHEFFVY 240


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,825,159
Number of Sequences: 5004
Number of extensions: 57877
Number of successful extensions: 111
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)