Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5067
         (365 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces po...    25   3.7  
SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase I|Schizosacchar...    25   4.9  
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho...    24   6.4  
SPBC16G5.09 |||serine carboxypeptidase |Schizosaccharomyces pomb...    24   8.5  

>SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 743

 Score = 25.0 bits (52), Expect = 3.7
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -3

Query: 228 ITQIIILRV*FLLHDVIPSPWKSIVNI 148
           +T  I+L + F+LHD   S W+S+V I
Sbjct: 220 LTGTILLVIMFVLHDGSLSIWQSLVMI 246


>SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase
           I|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 24.6 bits (51), Expect = 4.9
 Identities = 7/17 (41%), Positives = 14/17 (82%)
 Frame = +2

Query: 194 KNQTRKIIICVITGGRT 244
           K+  +K+++C+I+ GRT
Sbjct: 229 KDAWKKVVVCIISDGRT 245


>SPBC3E7.01 |fab1|ste12,
            SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
            Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1932

 Score = 24.2 bits (50), Expect = 6.4
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +2

Query: 89   TGVRIPQAGTNFSNEIRTQQMF 154
            T   IP+A  +F+N+I TQ  F
Sbjct: 1302 TSSDIPKANIDFTNDISTQNTF 1323


>SPBC16G5.09 |||serine carboxypeptidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 510

 Score = 23.8 bits (49), Expect = 8.5
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -3

Query: 195 LLHDVIPSPWKSIVNIC*VRISLEKLVPACGIRTP 91
           +L+ V   P K+ +N+    ISLE   P CG+  P
Sbjct: 266 ILYMVSKEPGKACMNM--YDISLESTYPTCGMDWP 298


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,482,405
Number of Sequences: 5004
Number of extensions: 27891
Number of successful extensions: 51
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 51
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 114084208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)