Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5067
         (365 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0304 - 2502760-2502774,2502844-2502921,2503035-2503103,250...    30   0.64 
07_01_0654 - 4900509-4900518,4900626-4900709,4900844-4901377,490...    29   0.85 
01_06_1749 - 39636951-39638102                                         27   3.4  
01_05_0723 + 24607800-24608357,24609616-24610158,24610281-246106...    26   7.9  

>08_01_0304 -
           2502760-2502774,2502844-2502921,2503035-2503103,
           2503200-2503289,2503400-2503517,2505548-2505678,
           2505756-2506025,2507175-2507308,2507635-2508088
          Length = 452

 Score = 29.9 bits (64), Expect = 0.64
 Identities = 15/31 (48%), Positives = 16/31 (51%)
 Frame = +2

Query: 83  RCTGVRIPQAGTNFSNEIRTQQMFTIDFHGE 175
           RCTGV I   G N   +I T      DFHGE
Sbjct: 159 RCTGVVIGWDGANKRAKILTAASVVCDFHGE 189


>07_01_0654 -
           4900509-4900518,4900626-4900709,4900844-4901377,
           4901462-4901619,4901703-4901832,4901918-4901999,
           4902097-4902230,4902314-4902410,4902512-4902788,
           4902881-4903024
          Length = 549

 Score = 29.5 bits (63), Expect = 0.85
 Identities = 15/63 (23%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
 Frame = +2

Query: 110 AGTNFSNEIRTQQMFTIDFHGEGITSC-NKNQTRKIIICVITGGRTSCESARVGTTAPPI 286
           +GT+   +    ++  +D  G GIT+C  +N+ +K    ++ G      + RV      +
Sbjct: 29  SGTSKRRDFTALELILVDEEGVGITACVGENEIQKFSTSIVEGHAYFLRNFRVSRQTKKL 88

Query: 287 SAV 295
           +AV
Sbjct: 89  NAV 91


>01_06_1749 - 39636951-39638102
          Length = 383

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = -1

Query: 347 SIVTASAPPFKPKRITA 297
           S+ +A+APPF P RIT+
Sbjct: 165 SVASAAAPPFDPSRITS 181


>01_05_0723 +
           24607800-24608357,24609616-24610158,24610281-24610697,
           24610804-24611244
          Length = 652

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +3

Query: 246 LVSPHG*VPPPRLFLP*SSNAFRLEGWGR 332
           ++ P G   PP  FLP  +  FRL+  GR
Sbjct: 518 ILQPDGAASPPHPFLPEGAALFRLDPEGR 546


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,229,887
Number of Sequences: 37544
Number of extensions: 197474
Number of successful extensions: 348
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 344
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 348
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 564709324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)