Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5066
         (625 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    28   1.3  
SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces ...    27   1.7  
SPAPJ696.01c |vps17||retromer complex subunit Vps17|Schizosaccha...    27   2.2  
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi...    27   2.9  
SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor |S...    26   3.8  
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su...    25   6.7  
SPBP8B7.13 |||conserved fungal protein|Schizosaccharomyces pombe...    25   8.9  

>SPBC23E6.09 |ssn6||transcriptional corepressor
           Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -1

Query: 496 GCPTPVVPTRAESQKVLPPVPP 431
           G P  + P  A +Q  LPP+PP
Sbjct: 235 GQPIAIAPVPAPNQAALPPIPP 256


>SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1147

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -1

Query: 490 PTPVVPTRAESQKVLPP 440
           P+PVVPTR+ S  +L P
Sbjct: 466 PSPVVPTRSNSSSILQP 482


>SPAPJ696.01c |vps17||retromer complex subunit
           Vps17|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 549

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 16/55 (29%), Positives = 25/55 (45%)
 Frame = -1

Query: 598 TWC*VVTGAP*TIYDVNSPLTLRYKF*DLSIVKTGCPTPVVPTRAESQKVLPPVP 434
           +W   V+  P  +YD    L +   +    ++ TG PT  +  +A  Q  LPP P
Sbjct: 185 SWLNYVSTNPNLLYDPELQLFVESDYGYSPLINTGNPTSGLKRKALKQFPLPPDP 239


>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
           Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 690

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 11/42 (26%), Positives = 20/42 (47%)
 Frame = -3

Query: 494 LPHPGGTYPRGVTKGPTTSTASQKSLITDRHAFHVKMKGPIP 369
           LPH   ++P  + + PT+  A   +     H+ H  +  P+P
Sbjct: 105 LPHDVASHPSYMVQSPTSYHACSNNQSPFPHSHHPPLHNPLP 146


>SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1052

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = +3

Query: 102 QQHVKNKSLTINSRYACVC-ASNTWYVVCVMFSL 200
           ++H KNK + +NS Y  +  A+   YV    F+L
Sbjct: 59  ERHGKNKKIAVNSEYGIIAVATEKNYVAVYHFTL 92


>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
           Sum3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 636

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -1

Query: 196 ENITHTTYHVFDAHTHAYLLFIVKLL 119
           ENIT    HV D+   +YLL I+  L
Sbjct: 402 ENITQKVVHVEDSEKRSYLLDILHTL 427


>SPBP8B7.13 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 251

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -1

Query: 316 RKLRGRRSMKFSTLIESIEKKC 251
           RKL  +RS KFS+++ S + +C
Sbjct: 141 RKLIPKRSAKFSSMVGSSDTRC 162


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,643,541
Number of Sequences: 5004
Number of extensions: 54594
Number of successful extensions: 116
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)